Variant report

Variant	rs11657541
Chromosome Location	chr17:67056283-67056284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10512523	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs1076401	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11077858	0.95[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap]
rs11077859	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11077860	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11077884	0.81[CEU][hapmap]
rs11453	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11659114	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11871766	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11871944	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12325889	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1541470	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs16973495	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs2079808	0.84[ASN][1000 genomes]
rs2302291	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2302292	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2302293	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2302294	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs4968983	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4968993	0.96[ASN][1000 genomes]
rs62082714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6501947	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs7207125	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7215642	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7217543	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7218871	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8066758	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs8067578	0.97[ASN][1000 genomes]
rs8068236	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs8070285	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9902602	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:67044400-67057200	Weak transcription	Fetal Lung	lung
3	chr17:67046200-67057000	Weak transcription	HUVEC	blood vessel
4	chr17:67048400-67057600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr17:67053800-67057000	Weak transcription	Stomach Mucosa	stomach
6	chr17:67053800-67066800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr17:67055200-67056400	Active TSS	Right Atrium	heart
8	chr17:67055200-67056400	Flanking Active TSS	NHDF-Ad	bronchial
9	chr17:67055400-67057200	Enhancers	Fetal Kidney	kidney
10	chr17:67055400-67058000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr17:67055400-67058000	Enhancers	Brain Substantia Nigra	brain
12	chr17:67055600-67056400	Enhancers	Brain Angular Gyrus	brain
13	chr17:67055600-67057800	Enhancers	Brain Germinal Matrix	brain
14	chr17:67055600-67058000	Enhancers	Brain Anterior Caudate	brain
15	chr17:67055800-67056400	Enhancers	Brain Cingulate Gyrus	brain
16	chr17:67055800-67057000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr17:67055800-67057200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr17:67055800-67057600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:67055800-67057600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr17:67056000-67057000	Enhancers	Muscle Satellite Cultured Cells	--
21	chr17:67056000-67057000	Active TSS	Fetal Muscle Leg	muscle
22	chr17:67056000-67058200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr17:67056200-67056600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr17:67056200-67056600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr17:67056200-67056600	Active TSS	Adipose Nuclei	Adipose
26	chr17:67056200-67057200	Weak transcription	Fetal Stomach	stomach
27	chr17:67056200-67057200	Active TSS	Ovary	ovary
28	chr17:67056200-67058000	Enhancers	Osteobl	bone
29	chr17:67056200-67058200	Enhancers	Brain Hippocampus Middle	brain
30	chr17:67056200-67075200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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