Variant report

Variant	rs8070285
Chromosome Location	chr17:67030601-67030602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10512523	0.91[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1076401	0.94[ASN][1000 genomes]
rs11077858	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11077859	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11077860	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11077922	0.81[JPT][hapmap]
rs11453	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs11657541	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs11659114	0.94[ASN][1000 genomes]
rs11871766	1.00[CHB][hapmap]
rs11871944	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs12325889	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1541470	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs16973495	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2079808	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2302292	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2302293	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs2302294	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4968983	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs4968993	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62082714	0.93[ASN][1000 genomes]
rs6501947	0.95[CHB][hapmap]
rs71357712	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7207125	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7215642	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7217543	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7218871	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs8066758	1.00[CHB][hapmap]
rs8067578	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8068236	1.00[CHB][hapmap]
rs9789039	0.86[EUR][1000 genomes]
rs9789083	0.86[JPT][hapmap]
rs9902602	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67000200-67044200	Weak transcription	Right Ventricle	heart
2	chr17:67007600-67042200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr17:67008400-67044000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr17:67009200-67043200	Weak transcription	Pancreas	Pancrea
5	chr17:67009400-67044000	Weak transcription	Colon Smooth Muscle	Colon
6	chr17:67010400-67041200	Weak transcription	NHDF-Ad	bronchial
7	chr17:67011400-67032600	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:67011600-67039200	Weak transcription	Left Ventricle	heart
9	chr17:67014000-67044200	Weak transcription	Psoas Muscle	Psoas
10	chr17:67022400-67032000	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr17:67023200-67033000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr17:67024000-67039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr17:67024200-67043200	Weak transcription	Fetal Lung	lung
14	chr17:67025600-67032200	Strong transcription	Adipose Nuclei	Adipose
15	chr17:67025800-67032400	Weak transcription	Brain Anterior Caudate	brain
16	chr17:67026800-67032200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr17:67027200-67033600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:67027400-67032400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr17:67027800-67039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr17:67028200-67038200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr17:67028600-67038000	Weak transcription	Liver	Liver
22	chr17:67029200-67038800	Weak transcription	Ovary	ovary

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