Variant report

Variant	rs16973495
Chromosome Location	chr17:66987416-66987417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10512523	0.90[CHB][hapmap]
rs11077858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11077859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11077860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11077884	0.96[CEU][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11453	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11657541	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs11871766	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs11871944	0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs12325889	0.90[CHB][hapmap]
rs12939564	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12940103	0.81[EUR][1000 genomes]
rs12942599	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12943969	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1541470	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2191212	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2191213	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2302291	1.00[YRI][hapmap]
rs2302292	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302293	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2302294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096265	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4548939	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4968983	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6501944	0.87[JPT][hapmap]
rs6501947	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs7207125	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7215642	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs7217543	0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs7218871	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8066758	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs8068236	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8070285	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs8070357	0.90[ASN][1000 genomes]
rs9894490	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66971000-66987800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:66977400-66989400	Weak transcription	Pancreas	Pancrea
3	chr17:66977600-67001400	Weak transcription	Fetal Lung	lung
4	chr17:66977800-66987600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr17:66977800-66991000	Weak transcription	Fetal Stomach	stomach
6	chr17:66977800-66991600	Strong transcription	Adipose Nuclei	Adipose
7	chr17:66977800-67027400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:66978600-66988000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:66978600-66989400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:66979400-67005400	Weak transcription	Psoas Muscle	Psoas
11	chr17:66979600-67001200	Weak transcription	Left Ventricle	heart
12	chr17:66980400-67009400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr17:66981400-67001200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr17:66981400-67001400	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:66982600-66990000	Strong transcription	Liver	Liver
16	chr17:66983600-66988000	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr17:66985400-66988200	Strong transcription	Ovary	ovary
18	chr17:66985600-66988000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr17:66986800-66989000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr17:66987200-66987600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr17:66987200-66987800	Enhancers	NHDF-Ad	bronchial
22	chr17:66987400-66989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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