Variant report

Variant	rs2302291
Chromosome Location	chr17:67028260-67028261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1076401	0.94[AFR][1000 genomes]
rs11077858	0.89[YRI][hapmap]
rs11077859	1.00[YRI][hapmap]
rs11077860	1.00[YRI][hapmap]
rs11657541	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs11659114	0.85[AFR][1000 genomes]
rs11871766	0.83[MEX][hapmap]
rs11871944	0.80[CEU][hapmap];0.82[CHD][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12943969	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16973495	1.00[YRI][hapmap]
rs2302294	1.00[YRI][hapmap]
rs62082714	0.85[AFR][1000 genomes]
rs7217543	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67000200-67044200	Weak transcription	Right Ventricle	heart
2	chr17:67003800-67030600	Weak transcription	Brain Angular Gyrus	brain
3	chr17:67007600-67042200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:67008400-67044000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:67009200-67043200	Weak transcription	Pancreas	Pancrea
6	chr17:67009400-67044000	Weak transcription	Colon Smooth Muscle	Colon
7	chr17:67010400-67041200	Weak transcription	NHDF-Ad	bronchial
8	chr17:67011400-67032600	Weak transcription	Fetal Muscle Leg	muscle
9	chr17:67011600-67039200	Weak transcription	Left Ventricle	heart
10	chr17:67014000-67044200	Weak transcription	Psoas Muscle	Psoas
11	chr17:67022400-67032000	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr17:67023200-67033000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr17:67024000-67039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr17:67024200-67043200	Weak transcription	Fetal Lung	lung
15	chr17:67025600-67032200	Strong transcription	Adipose Nuclei	Adipose
16	chr17:67025800-67032400	Weak transcription	Brain Anterior Caudate	brain
17	chr17:67026800-67032200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr17:67027000-67028600	Strong transcription	Liver	Liver
19	chr17:67027200-67033600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr17:67027400-67028400	Enhancers	Fetal Intestine Large	intestine
21	chr17:67027400-67029200	Enhancers	HepG2	liver
22	chr17:67027400-67032400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr17:67027800-67028600	Enhancers	Fetal Intestine Small	intestine
24	chr17:67027800-67029200	Strong transcription	Ovary	ovary
25	chr17:67027800-67039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr17:67028200-67038200	Weak transcription	Fetal Muscle Trunk	muscle

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