Variant report

Variant	rs2079808
Chromosome Location	chr17:67033895-67033896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10512523	0.96[EUR][1000 genomes]
rs1076401	0.88[ASN][1000 genomes]
rs11657541	0.84[ASN][1000 genomes]
rs11659114	0.87[ASN][1000 genomes]
rs11871944	0.86[ASN][1000 genomes]
rs12325889	0.87[EUR][1000 genomes]
rs4968993	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62082714	0.86[ASN][1000 genomes]
rs71357712	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7217543	0.87[ASN][1000 genomes]
rs8066691	0.90[EUR][1000 genomes]
rs8067578	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8070285	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9789039	0.91[EUR][1000 genomes]
rs9789083	0.81[EUR][1000 genomes]
rs9902602	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67000200-67044200	Weak transcription	Right Ventricle	heart
2	chr17:67007600-67042200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr17:67008400-67044000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr17:67009200-67043200	Weak transcription	Pancreas	Pancrea
5	chr17:67009400-67044000	Weak transcription	Colon Smooth Muscle	Colon
6	chr17:67010400-67041200	Weak transcription	NHDF-Ad	bronchial
7	chr17:67011600-67039200	Weak transcription	Left Ventricle	heart
8	chr17:67014000-67044200	Weak transcription	Psoas Muscle	Psoas
9	chr17:67024000-67039200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr17:67024200-67043200	Weak transcription	Fetal Lung	lung
11	chr17:67027800-67039200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr17:67028200-67038200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr17:67028600-67038000	Weak transcription	Liver	Liver
14	chr17:67029200-67038800	Weak transcription	Ovary	ovary
15	chr17:67032000-67038800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr17:67032200-67038600	Weak transcription	Adipose Nuclei	Adipose
17	chr17:67033600-67035200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:67033800-67038000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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