Variant report

Variant	rs1107843
Chromosome Location	chr11:76020672-76020673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11236698	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2618087	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2618088	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2851464	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76018600-76022800	Weak transcription	Fetal Brain Female	brain
2	chr11:76019400-76022000	Weak transcription	Fetal Brain Male	brain
3	chr11:76019400-76024400	Weak transcription	Right Atrium	heart
4	chr11:76019600-76024200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:76019600-76025000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:76019800-76021000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:76019800-76022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:76019800-76024800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:76019800-76024800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:76020400-76026200	Enhancers	Fetal Lung	lung
11	chr11:76020600-76020800	Enhancers	Esophagus	oesophagus
12	chr11:76020600-76020800	Bivalent Enhancer	HepG2	liver
13	chr11:76020600-76021000	Enhancers	Adipose Nuclei	Adipose
14	chr11:76020600-76021400	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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