Variant report

Variant	rs11236698
Chromosome Location	chr11:76020398-76020399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1107843	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2618087	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2618088	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2851464	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs750802	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11236698	PGM2L1	cis	parietal	SCAN
rs11236698	KCTD21	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76018400-76020600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:76018600-76022800	Weak transcription	Fetal Brain Female	brain
3	chr11:76019400-76022000	Weak transcription	Fetal Brain Male	brain
4	chr11:76019400-76024400	Weak transcription	Right Atrium	heart
5	chr11:76019600-76020600	Weak transcription	Adipose Nuclei	Adipose
6	chr11:76019600-76024200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:76019600-76025000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:76019800-76021000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:76019800-76022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:76019800-76024800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:76019800-76024800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:76020000-76020400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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