Variant report

Variant	rs2618087
Chromosome Location	chr11:76026977-76026978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10899206	0.82[EUR][1000 genomes]
rs1107843	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11236698	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11236699	0.82[EUR][1000 genomes]
rs2156715	0.83[EUR][1000 genomes]
rs2618088	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2851464	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4564359	0.82[EUR][1000 genomes]
rs736981	0.83[EUR][1000 genomes]
rs736982	0.83[EUR][1000 genomes]
rs750801	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs750802	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs878904	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76024400-76027000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr11:76025000-76027000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:76025000-76027000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:76025400-76027000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76025400-76029800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76025800-76028400	Weak transcription	Hela-S3	cervix
7	chr11:76025800-76029200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:76025800-76031200	Weak transcription	Placenta	Placenta
9	chr11:76026000-76028400	Weak transcription	Adipose Nuclei	Adipose
10	chr11:76026200-76029400	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links