Variant report

Variant	rs11236699
Chromosome Location	chr11:76021112-76021113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10899206	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1893916	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2004607	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2156715	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2213019	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2618087	0.82[EUR][1000 genomes]
rs2618088	0.83[EUR][1000 genomes]
rs4564359	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs736981	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs736982	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs750802	0.81[EUR][1000 genomes]
rs878904	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11236699	INTS4	cis	cerebellum	SCAN
rs11236699	FOLR3	cis	parietal	SCAN
rs11236699	KCTD21	cis	parietal	SCAN
rs11236699	FABP7	trans	cerebellum	SCAN
rs11236699	FAM168A	cis	cerebellum	SCAN
rs11236699	PGM2L1	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76018600-76022800	Weak transcription	Fetal Brain Female	brain
2	chr11:76019400-76022000	Weak transcription	Fetal Brain Male	brain
3	chr11:76019400-76024400	Weak transcription	Right Atrium	heart
4	chr11:76019600-76024200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:76019600-76025000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:76019800-76022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:76019800-76024800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:76019800-76024800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:76020400-76026200	Enhancers	Fetal Lung	lung
10	chr11:76020600-76021400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:76021000-76021200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr11:76021000-76021600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:76021000-76022000	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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