Variant report

Variant	rs2156715
Chromosome Location	chr11:76022535-76022536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10899206	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11236699	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1893916	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2004607	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2213019	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2618087	0.83[EUR][1000 genomes]
rs2618088	0.84[EUR][1000 genomes]
rs4564359	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs736981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs750802	0.82[EUR][1000 genomes]
rs878904	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76018600-76022800	Weak transcription	Fetal Brain Female	brain
2	chr11:76019400-76024400	Weak transcription	Right Atrium	heart
3	chr11:76019600-76024200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr11:76019600-76025000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:76019800-76022600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:76019800-76024800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:76019800-76024800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:76020400-76026200	Enhancers	Fetal Lung	lung
9	chr11:76021200-76022800	Weak transcription	Spleen	Spleen
10	chr11:76021400-76024400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:76021800-76023000	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr11:76022200-76022600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr11:76022400-76024800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:76022400-76025200	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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