Variant report

Variant	rs11078937
Chromosome Location	chr17:38208553-38208554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38207226..38209173-chr17:38275974..38278338,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28527215	0.86[AFR][1000 genomes]
rs36055799	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6503535	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6503536	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8073253	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs8077700	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8082130	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892118	0.88[AFR][1000 genomes]
rs9903676	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9912903	0.87[AFR][1000 genomes]
rs9913148	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9916152	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38186600-38209800	Weak transcription	Small Intestine	intestine
2	chr17:38188800-38209400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:38189600-38209600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr17:38189600-38209600	Weak transcription	Psoas Muscle	Psoas
5	chr17:38190600-38209600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:38191000-38208800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:38192000-38209600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:38192200-38209400	Weak transcription	Fetal Brain Male	brain
9	chr17:38192200-38209600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:38192400-38209600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:38192400-38209600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr17:38192400-38209600	Weak transcription	Colonic Mucosa	Colon
13	chr17:38192400-38209800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:38192400-38210000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr17:38192600-38208600	Weak transcription	NHEK	skin
16	chr17:38192600-38209400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr17:38192600-38209800	Weak transcription	Aorta	Aorta
18	chr17:38193600-38208600	Weak transcription	K562	blood
19	chr17:38195400-38209600	Weak transcription	Pancreas	Pancrea
20	chr17:38195600-38208600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr17:38195600-38209400	Weak transcription	Hela-S3	cervix
22	chr17:38195800-38208800	Weak transcription	NHLF	lung
23	chr17:38195800-38209400	Weak transcription	Stomach Mucosa	stomach
24	chr17:38195800-38209600	Weak transcription	Fetal Heart	heart
25	chr17:38195800-38209800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr17:38196000-38209600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr17:38196000-38209800	Weak transcription	HSMMtube	muscle
28	chr17:38197200-38209200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:38197200-38209400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr17:38197400-38209200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr17:38197800-38209600	Strong transcription	Fetal Muscle Leg	muscle
32	chr17:38198600-38209400	Strong transcription	Fetal Stomach	stomach
33	chr17:38198800-38209400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr17:38198800-38209400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr17:38198800-38209600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr17:38199200-38209400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr17:38199200-38209600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr17:38199600-38209400	Weak transcription	GM12878-XiMat	blood
39	chr17:38199800-38208600	Weak transcription	Primary B cells from cord blood	blood
40	chr17:38199800-38209600	Weak transcription	NHDF-Ad	bronchial
41	chr17:38199800-38209800	Weak transcription	Gastric	stomach
42	chr17:38201200-38209400	Strong transcription	Liver	Liver
43	chr17:38201400-38208800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr17:38201400-38209400	Strong transcription	Fetal Thymus	thymus
45	chr17:38201400-38209600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:38201600-38208600	Weak transcription	Osteobl	bone
47	chr17:38201600-38209400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr17:38201800-38209600	Strong transcription	Fetal Intestine Large	intestine
49	chr17:38203000-38209000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr17:38203000-38209000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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