Variant report

Variant	rs36055799
Chromosome Location	chr17:38210783-38210784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr17:38210479-38211136	K562	blood:	n/a	chr17:38210676-38210685
2	POLR2A	chr17:38210756-38211006	A549	lung:	n/a	n/a
3	POLR2A	chr17:38210422-38211079	ECC-1	luminal epithelium:	n/a	n/a
4	ZNF143	chr17:38210464-38211231	K562	blood:	n/a	chr17:38210734-38210752
5	MYC	chr17:38210431-38211087	K562	blood:	n/a	chr17:38211009-38211018
6	BRCA1	chr17:38210458-38211041	Hela-S3	cervix:	n/a	n/a
7	NFYA	chr17:38209990-38211242	K562	blood:	n/a	chr17:38210698-38210716 chr17:38210673-38210687
8	CHD2	chr17:38210419-38210964	K562	blood:	n/a	n/a
9	POLR2A	chr17:38210330-38211065	ECC-1	luminal epithelium:	n/a	n/a
10	IRF3	chr17:38210455-38210865	Hela-S3	cervix:	n/a	chr17:38210676-38210685
11	MYC	chr17:38210506-38211100	NB4	blood:	n/a	chr17:38211009-38211018
12	MTA3	chr17:38210209-38211092	GM12878	blood:	n/a	n/a
13	MAFK	chr17:38210525-38211001	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr17:38210354-38211051	H1-neurons	neurons:	n/a	n/a
15	SP1	chr17:38210211-38211242	HCT-116	colon:	n/a	chr17:38210699-38210720 chr17:38210665-38210686
16	ZNF143	chr17:38210493-38211020	Hela-S3	cervix:	n/a	chr17:38210734-38210752
17	NFIC	chr17:38210335-38211004	GM12878	blood:	n/a	chr17:38210648-38210664
18	YY1	chr17:38210320-38211016	GM12878	blood:	n/a	chr17:38210639-38210656 chr17:38210644-38210652 chr17:38210641-38210663 chr17:38210640-38210656 chr17:38210641-38210651
19	POLR2A	chr17:38210394-38210968	SK-N-MC	brain:	n/a	n/a
20	MAZ	chr17:38210490-38211195	K562	blood:	n/a	chr17:38211009-38211018
21	ZNF143	chr17:38210455-38211008	H1-hESC	embryonic stem cell:	n/a	chr17:38210734-38210752
22	SMC3	chr17:38210487-38211075	Hela-S3	cervix:	n/a	n/a
23	TBL1XR1	chr17:38210489-38211182	K562	blood:	n/a	n/a
24	POLR2A	chr17:38210417-38210996	MCF10A-Er-Src	breast:	n/a	n/a
25	ETS1	chr17:38210291-38210958	A549	lung:	n/a	chr17:38210741-38210754 chr17:38210528-38210542 chr17:38210560-38210573 chr17:38210740-38210753
26	SIX5	chr17:38210442-38210980	K562	blood:	n/a	n/a
27	E2F4	chr17:38210496-38210836	MCF10A-Er-Src	breast:	n/a	n/a
28	POLR2A	chr17:38210420-38211259	K562	blood:	n/a	n/a
29	YY1	chr17:38210309-38211099	K562	blood:	n/a	chr17:38210639-38210656 chr17:38210644-38210652 chr17:38210641-38210663 chr17:38210640-38210656 chr17:38210641-38210651
30	POLR2A	chr17:38210402-38211287	K562	blood:	n/a	n/a
31	POLR2A	chr17:38210395-38211101	Hela-S3	cervix:	n/a	n/a
32	HEY1	chr17:38210398-38211115	K562	blood:	n/a	n/a
33	SP1	chr17:38210423-38210848	K562	blood:	n/a	chr17:38210699-38210720 chr17:38210665-38210686
34	GTF2F1	chr17:38210452-38211052	Hela-S3	cervix:	n/a	n/a
35	RUNX3	chr17:38210384-38210905	GM12878	blood:	n/a	n/a
36	ATF2	chr17:38210446-38210919	GM12878	blood:	n/a	n/a
37	SP1	chr17:38210187-38211219	A549	lung:	n/a	chr17:38210699-38210720 chr17:38210665-38210686
38	CHD2	chr17:38210515-38211047	HepG2	liver:	n/a	n/a
39	MAX	chr17:38210360-38211153	ECC-1	luminal epithelium:	n/a	chr17:38211009-38211018
40	SRF	chr17:38210442-38210848	MCF-7	breast:	n/a	n/a
41	POLR2A	chr17:38210424-38211246	NB4	blood:	n/a	n/a
42	TAF1	chr17:38210358-38210963	PFSK-1	brain:	n/a	n/a
43	YY1	chr17:38210274-38211097	ECC-1	luminal epithelium:	n/a	chr17:38210639-38210656 chr17:38210644-38210652 chr17:38210641-38210663 chr17:38210640-38210656 chr17:38210641-38210651
44	TCF7L2	chr17:38210466-38211187	HCT-116	colon:	n/a	n/a
45	TBP	chr17:38210428-38210926	HepG2	liver:	n/a	n/a
46	IRF3	chr17:38210498-38210887	GM12878	blood:	n/a	chr17:38210676-38210685
47	STAT3	chr17:38210683-38210789	MCF10A-Er-Src	breast:	n/a	chr17:38210737-38210745 chr17:38210737-38210760
48	YY1	chr17:38210386-38211099	H1-hESC	embryonic stem cell:	n/a	chr17:38210639-38210656 chr17:38210644-38210652 chr17:38210641-38210663 chr17:38210640-38210656 chr17:38210641-38210651
49	POLR2A	chr17:38210386-38211328	K562	blood:	n/a	n/a
50	JUND	chr17:38210547-38210791	HepG2	liver:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:38210780-38210830	HUVEC	blood vessel:	n/a
2	chr17:38210780-38210830	SK-N-MC	brain:	n/a
3	chr17:38210780-38210830	GM12892	blood:	n/a
4	chr17:38210780-38210830	HEEpiC	esophagus:	n/a
5	chr17:38210780-38210830	HL-60	blood:	n/a
6	chr17:38210780-38210830	CMK	blood:	n/a
7	chr17:38210780-38210830	GM06990	blood:	n/a
8	chr17:38210780-38210830	HEK293	kidney:	embryo
9	chr17:38210780-38210830	GM12878	blood:	n/a
10	chr17:38210780-38210830	AG04449	skin:	fetal
11	chr17:38210780-38210830	PFSK-1	brain:	n/a
12	chr17:38210780-38210830	HCF	heart:	n/a
13	chr17:38210780-38210830	AG09319	gingival:	n/a
14	chr17:38210780-38210830	HepG2	liver:	n/a
15	chr17:38210780-38210830	IMR90	lung:	fetal
16	chr17:38210780-38210830	HIPEpiC	eye:	n/a
17	chr17:38210780-38210830	BE2_C	brain:	n/a
18	chr17:38210780-38210830	SAEC	small airway:	n/a
19	chr17:38210780-38210830	RPTEC	kidney:	n/a
20	chr17:38210780-38210830	GM12891	blood:	n/a
21	chr17:38210780-38210830	PANC-1	pancreas:	n/a
22	chr17:38210780-38210830	ovcar-3	ovarian:	n/a
23	chr17:38210780-38210830	ECC-1	luminal epithelium:	n/a
24	chr17:38210780-38210830	A549	lung:	n/a
25	chr17:38210780-38210830	H1-hESC	embryonic stem cell:	embryo
26	chr17:38210780-38210830	MCF10A-Er-Src	breast:	n/a
27	chr17:38210780-38210830	HMEC	breast:	n/a
28	chr17:38210780-38210830	HRCEpiC	kidney:	n/a
29	chr17:38210780-38210830	HAEpiC	amniotic membrane:	n/a
30	chr17:38210780-38210830	GM19239	blood:	n/a
31	chr17:38210780-38210830	HNPCEpiC	eye:	n/a
32	chr17:38210780-38210830	NHDF-neo	bronchial:	n/a
33	chr17:38210780-38210830	HCM	heart:	n/a
34	chr17:38210780-38210830	NT2-D1	testis:	n/a
35	chr17:38210780-38210830	NHBE	bronchial:	n/a
36	chr17:38210780-38210830	Caco-2	colon:	n/a
37	chr17:38210780-38210830	NH-A	brain:	n/a
38	chr17:38210780-38210830	HRE	kidney:	n/a
39	chr17:38210780-38210830	SKMC	muscle:	n/a
40	chr17:38210780-38210830	HCPEpiC	choroid plexus:	n/a
41	chr17:38210780-38210830	ProgFib	skin:	n/a
42	chr17:38210780-38210830	NB4	blood:	n/a
43	chr17:38210780-38210830	AG09309	skin:	n/a
44	chr17:38210780-38210830	BJ	skin:	n/a
45	chr17:38210780-38210830	AG10803	skin:	n/a
46	chr17:38210780-38210830	T-47D	breast:	n/a
47	chr17:38210780-38210830	AG04450	lung:	fetal
48	chr17:38210780-38210830	LNCaP	prostate:	n/a
49	chr17:38210780-38210830	HPAEpiC	pulmonary alveolar:	n/a
50	chr17:38210780-38210830	HRPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:38208954..38211941-chr17:38226505..38229189,4	MCF-7	breast:
2	chr17:38210056..38212088-chr17:38279040..38281229,2	MCF-7	breast:
3	chr17:38174715..38177590-chr17:38209751..38212777,3	K562	blood:
4	chr17:38188602..38190151-chr17:38209862..38212008,2	MCF-7	breast:
5	chr17:38210672..38211284-chr20:34203487..34204295,2	Hela-S3	cervix:
6	chr17:38174842..38178903-chr17:38208625..38211251,3	K562	blood:
7	chr17:38210481..38212413-chr17:38218576..38220480,2	MCF-7	breast:

Variant related genes	Relation type
MED24	TF binding region
THRA	TF binding region
THRA	CpG island
MED24	CpG island
ENSG00000061656	Chromatin interaction
ENSG00000188895	Chromatin interaction
ENSG00000008838	Chromatin interaction
ENSG00000126351	Chromatin interaction

rs_ID	r²[population]
rs11078937	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28527215	0.85[AFR][1000 genomes]
rs6503535	0.86[AFR][1000 genomes]
rs6503536	0.86[AFR][1000 genomes]
rs8073253	0.86[AFR][1000 genomes]
rs8077700	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8082130	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9892118	0.87[AFR][1000 genomes]
rs9903676	0.86[AFR][1000 genomes]
rs9912903	0.87[AFR][1000 genomes]
rs9913148	0.87[AFR][1000 genomes]
rs9916152	0.84[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38209600-38210800	Active TSS	Primary T helper naive cells from peripheral blood	blood
2	chr17:38209600-38211000	Active TSS	Brain Cingulate Gyrus	brain
3	chr17:38209600-38211200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:38209600-38211400	Active TSS	H9 Cell Line	embryonic stem cell
5	chr17:38209600-38211400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr17:38209600-38211400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr17:38209600-38211400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:38209600-38211400	Active TSS	Psoas Muscle	Psoas
9	chr17:38209600-38211600	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr17:38209600-38211800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr17:38209800-38211000	Active TSS	Primary T cells from cord blood	blood
12	chr17:38209800-38211000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr17:38209800-38211000	Active TSS	Right Atrium	heart
14	chr17:38209800-38211000	Active TSS	GM12878-XiMat	blood
15	chr17:38209800-38211200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr17:38209800-38211200	Active TSS	Right Ventricle	heart
17	chr17:38209800-38211400	Active TSS	H1 Cell Line	embryonic stem cell
18	chr17:38209800-38211400	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr17:38209800-38211400	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr17:38209800-38211600	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr17:38210000-38210800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:38210000-38210800	Active TSS	HMEC	breast
23	chr17:38210000-38211000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:38210000-38211000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr17:38210000-38211000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr17:38210000-38211000	Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr17:38210000-38211000	Active TSS	Colon Smooth Muscle	Colon
28	chr17:38210000-38211000	Active TSS	Esophagus	oesophagus
29	chr17:38210000-38211000	Active TSS	Fetal Intestine Small	intestine
30	chr17:38210000-38211000	Active TSS	Fetal Lung	lung
31	chr17:38210000-38211000	Active TSS	Gastric	stomach
32	chr17:38210000-38211000	Active TSS	Left Ventricle	heart
33	chr17:38210000-38211000	Active TSS	Lung	lung
34	chr17:38210000-38211000	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr17:38210000-38211000	Active TSS	NH-A	brain
36	chr17:38210000-38211000	Active TSS	NHEK	skin
37	chr17:38210000-38211200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr17:38210000-38211200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr17:38210000-38211200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
40	chr17:38210000-38211200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
41	chr17:38210000-38211200	Active TSS	Aorta	Aorta
42	chr17:38210000-38211200	Active TSS	Brain Germinal Matrix	brain
43	chr17:38210000-38211200	Active TSS	Ovary	ovary
44	chr17:38210000-38211200	Active TSS	Placenta Amnion	Placenta Amnion
45	chr17:38210000-38211200	Active TSS	HSMMtube	muscle
46	chr17:38210000-38211200	Active TSS	K562	blood
47	chr17:38210000-38211200	Active TSS	NHDF-Ad	bronchial
48	chr17:38210000-38211400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr17:38210000-38211400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr17:38210000-38211400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links