Variant report

Variant	rs11079558
Chromosome Location	chr17:63120122-63120123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:33)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:33 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63117748..63120899-chr17:63122110..63128969,9	MCF-7	breast:
2	chr17:62969930..62974223-chr17:63117213..63122121,8	MCF-7	breast:
3	chr17:63120023..63122659-chr17:63155151..63157208,2	MCF-7	breast:
4	chr17:63000197..63002016-chr17:63118020..63120951,2	MCF-7	breast:
5	chr17:63119041..63121818-chr17:63180202..63183514,3	MCF-7	breast:
6	chr17:63118180..63120379-chr17:63138460..63140911,3	MCF-7	breast:
7	chr17:63117665..63121583-chr17:63131912..63139197,8	K562	blood:
8	chr17:63118227..63121662-chr17:63122983..63126434,3	K562	blood:
9	chr17:63058260..63060968-chr17:63117386..63120197,2	MCF-7	breast:
10	chr17:63063950..63066539-chr17:63119557..63121268,2	MCF-7	breast:
11	chr17:63118160..63120785-chr17:63189536..63191334,2	MCF-7	breast:
12	chr17:62981235..62983059-chr17:63118684..63121178,2	MCF-7	breast:
13	chr17:63095279..63098151-chr17:63117643..63122061,8	MCF-7	breast:
14	chr17:63050818..63055787-chr17:63117380..63122567,9	MCF-7	breast:
15	chr17:63103004..63106074-chr17:63118329..63120568,5	MCF-7	breast:
16	chr17:63106164..63108847-chr17:63116672..63121069,3	MCF-7	breast:
17	chr17:63094877..63096816-chr17:63119599..63121828,2	K562	blood:
18	chr17:63095331..63099296-chr17:63117936..63120634,6	MCF-7	breast:
19	chr17:62914231..62916135-chr17:63119680..63121849,2	MCF-7	breast:
20	chr17:63118932..63120932-chr17:63131317..63133412,3	K562	blood:
21	chr17:63117889..63120887-chr17:63144486..63147111,3	MCF-7	breast:
22	chr17:63061368..63063450-chr17:63117948..63120311,2	MCF-7	breast:
23	chr17:62968870..62973238-chr17:63117876..63121265,6	MCF-7	breast:
24	chr17:63099430..63102253-chr17:63117959..63120208,2	MCF-7	breast:
25	chr17:63073557..63076220-chr17:63118767..63121189,2	MCF-7	breast:
26	chr17:63118090..63122363-chr17:63130116..63137221,12	MCF-7	breast:
27	chr17:63118923..63121518-chr17:63126607..63128778,3	K562	blood:
28	chr17:63117696..63121583-chr17:63133620..63139197,5	K562	blood:
29	chr17:63117935..63120127-chr17:63196537..63198308,2	MCF-7	breast:
30	chr17:63046304..63055748-chr17:63116888..63122496,16	MCF-7	breast:
31	chr17:63087175..63090239-chr17:63118301..63120759,3	MCF-7	breast:
32	chr17:62969852..62972063-chr17:63119171..63120865,2	K562	blood:
33	chr17:63030304..63032420-chr17:63118114..63120273,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction
ENSG00000176809	Chromatin interaction
ENSG00000263470	Chromatin interaction
ENSG00000265883	Chromatin interaction
ENSG00000214174	Chromatin interaction
ENSG00000108370	Chromatin interaction
ENSG00000266598	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1010271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079557	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11079559	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12450928	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451009	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12603197	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1530352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554048	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554049	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561939	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1968573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1968574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445249	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs299841	0.82[AFR][1000 genomes]
rs429583	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581735	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791231	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7207632	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7212241	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7215779	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7219245	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7219799	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7219809	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8073607	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8073924	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8075179	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8080637	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080746	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8081971	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303478	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898914	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899243	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899401	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899628	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912432	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913707	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913725	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118800-63120200	Enhancers	Fetal Heart	heart
2	chr17:63118800-63127000	Weak transcription	Spleen	Spleen
3	chr17:63119000-63120200	Active TSS	Adipose Nuclei	Adipose
4	chr17:63119600-63120200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr17:63119600-63120200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr17:63119600-63120200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
7	chr17:63119600-63120200	Flanking Active TSS	Dnd41	blood
8	chr17:63119600-63120200	Flanking Active TSS	GM12878-XiMat	blood
9	chr17:63119600-63120200	Flanking Active TSS	Hela-S3	cervix
10	chr17:63119600-63120200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr17:63119600-63120200	Flanking Active TSS	Osteobl	bone
12	chr17:63119600-63120600	Flanking Active TSS	A549	lung
13	chr17:63119800-63120200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:63119800-63120200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr17:63119800-63120200	Enhancers	Primary B cells from peripheral blood	blood
16	chr17:63119800-63120200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr17:63119800-63120200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:63119800-63120200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr17:63119800-63120200	Enhancers	Aorta	Aorta
20	chr17:63119800-63120200	Enhancers	Fetal Lung	lung
21	chr17:63119800-63120200	Enhancers	Placenta	Placenta
22	chr17:63119800-63120200	Enhancers	Fetal Thymus	thymus
23	chr17:63119800-63120200	Enhancers	Lung	lung
24	chr17:63119800-63120200	Enhancers	Psoas Muscle	Psoas
25	chr17:63119800-63120200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr17:63119800-63120200	Enhancers	Thymus	Thymus
27	chr17:63119800-63120200	Enhancers	HSMM	muscle
28	chr17:63119800-63120200	Enhancers	HSMMtube	muscle
29	chr17:63119800-63120600	Enhancers	Fetal Brain Male	brain
30	chr17:63119800-63120800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr17:63119800-63120800	Enhancers	Fetal Stomach	stomach
32	chr17:63119800-63120800	Enhancers	NHLF	lung
33	chr17:63119800-63121000	Enhancers	NHDF-Ad	bronchial
34	chr17:63119800-63121800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:63119800-63133600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:63120000-63120200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr17:63120000-63120200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr17:63120000-63120200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr17:63120000-63120200	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr17:63120000-63120200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr17:63120000-63120200	Enhancers	Primary T cells fromperipheralblood	blood
42	chr17:63120000-63120200	Enhancers	Primary hematopoietic stem cells	blood
43	chr17:63120000-63120200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr17:63120000-63120200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr17:63120000-63120200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr17:63120000-63120200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr17:63120000-63120200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr17:63120000-63120200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr17:63120000-63120200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr17:63120000-63120200	Enhancers	Cortex derived primary cultured neurospheres	brain

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