Variant report

Variant	rs9899401
Chromosome Location	chr17:63119841-63119842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:35)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:35 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63117748..63120899-chr17:63122110..63128969,9	MCF-7	breast:
2	chr17:62969930..62974223-chr17:63117213..63122121,8	MCF-7	breast:
3	chr17:63000197..63002016-chr17:63118020..63120951,2	MCF-7	breast:
4	chr17:63119041..63121818-chr17:63180202..63183514,3	MCF-7	breast:
5	chr17:63118180..63120379-chr17:63138460..63140911,3	MCF-7	breast:
6	chr17:63117665..63121583-chr17:63131912..63139197,8	K562	blood:
7	chr17:63118227..63121662-chr17:63122983..63126434,3	K562	blood:
8	chr17:63119469..63120108-chr20:41117749..41118269,2	HCT-116	colon:
9	chr17:63058260..63060968-chr17:63117386..63120197,2	MCF-7	breast:
10	chr17:62983232..62984791-chr17:63118181..63120024,2	MCF-7	breast:
11	chr17:63063950..63066539-chr17:63119557..63121268,2	MCF-7	breast:
12	chr17:63118160..63120785-chr17:63189536..63191334,2	MCF-7	breast:
13	chr17:62981235..62983059-chr17:63118684..63121178,2	MCF-7	breast:
14	chr17:63095279..63098151-chr17:63117643..63122061,8	MCF-7	breast:
15	chr17:63050818..63055787-chr17:63117380..63122567,9	MCF-7	breast:
16	chr17:63103004..63106074-chr17:63118329..63120568,5	MCF-7	breast:
17	chr17:63106164..63108847-chr17:63116672..63121069,3	MCF-7	breast:
18	chr17:63094877..63096816-chr17:63119599..63121828,2	K562	blood:
19	chr17:63095331..63099296-chr17:63117936..63120634,6	MCF-7	breast:
20	chr17:62914231..62916135-chr17:63119680..63121849,2	MCF-7	breast:
21	chr17:63118932..63120932-chr17:63131317..63133412,3	K562	blood:
22	chr12:56497557..56498361-chr17:63119293..63120050,2	Hela-S3	cervix:
23	chr17:63117889..63120887-chr17:63144486..63147111,3	MCF-7	breast:
24	chr17:63061368..63063450-chr17:63117948..63120311,2	MCF-7	breast:
25	chr17:62968870..62973238-chr17:63117876..63121265,6	MCF-7	breast:
26	chr17:63099430..63102253-chr17:63117959..63120208,2	MCF-7	breast:
27	chr17:63073557..63076220-chr17:63118767..63121189,2	MCF-7	breast:
28	chr17:63118090..63122363-chr17:63130116..63137221,12	MCF-7	breast:
29	chr17:63118923..63121518-chr17:63126607..63128778,3	K562	blood:
30	chr17:63117696..63121583-chr17:63133620..63139197,5	K562	blood:
31	chr17:63117935..63120127-chr17:63196537..63198308,2	MCF-7	breast:
32	chr17:63046304..63055748-chr17:63116888..63122496,16	MCF-7	breast:
33	chr17:63087175..63090239-chr17:63118301..63120759,3	MCF-7	breast:
34	chr17:62969852..62972063-chr17:63119171..63120865,2	K562	blood:
35	chr17:63030304..63032420-chr17:63118114..63120273,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000176809	Chromatin interaction
ENSG00000120063	Chromatin interaction
ENSG00000108370	Chromatin interaction
ENSG00000170515	Chromatin interaction
ENSG00000266598	Chromatin interaction
ENSG00000265883	Chromatin interaction
ENSG00000214174	Chromatin interaction
ENSG00000263470	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1010271	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853058	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853059	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079557	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11079558	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079559	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12450928	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451009	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12603197	0.84[AMR][1000 genomes]
rs1530352	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530353	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561939	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1968573	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1968574	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445249	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs299841	0.81[AFR][1000 genomes]
rs429583	1.00[ASN][1000 genomes]
rs4581735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791231	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4791234	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7207632	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7207651	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7207860	0.82[AMR][1000 genomes]
rs7207995	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7212241	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215779	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7219245	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219799	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219809	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073607	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8073924	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075179	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080746	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118400-63120000	Active TSS	Rectal Smooth Muscle	rectum
2	chr17:63118800-63120000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr17:63118800-63120000	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr17:63118800-63120000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr17:63118800-63120000	Active TSS	Fetal Brain Female	brain
6	chr17:63118800-63120000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr17:63118800-63120200	Enhancers	Fetal Heart	heart
8	chr17:63118800-63127000	Weak transcription	Spleen	Spleen
9	chr17:63119000-63120000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr17:63119000-63120000	Active TSS	Brain Substantia Nigra	brain
11	chr17:63119000-63120000	Active TSS	Stomach Smooth Muscle	stomach
12	chr17:63119000-63120000	Active TSS	HMEC	breast
13	chr17:63119000-63120200	Active TSS	Adipose Nuclei	Adipose
14	chr17:63119200-63120000	Active TSS	Primary B cells from cord blood	blood
15	chr17:63119400-63120000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr17:63119600-63120000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:63119600-63120000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:63119600-63120000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr17:63119600-63120000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:63119600-63120000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr17:63119600-63120000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr17:63119600-63120000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr17:63119600-63120000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr17:63119600-63120000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:63119600-63120000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr17:63119600-63120000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr17:63119600-63120000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr17:63119600-63120000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:63119600-63120000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr17:63119600-63120000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr17:63119600-63120000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:63119600-63120000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr17:63119600-63120000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr17:63119600-63120000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:63119600-63120000	Flanking Active TSS	Liver	Liver
36	chr17:63119600-63120000	Flanking Active TSS	Brain Cingulate Gyrus	brain
37	chr17:63119600-63120000	Flanking Active TSS	Colonic Mucosa	Colon
38	chr17:63119600-63120000	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr17:63119600-63120000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
40	chr17:63119600-63120000	Flanking Active TSS	Fetal Intestine Large	intestine
41	chr17:63119600-63120000	Flanking Active TSS	Fetal Kidney	kidney
42	chr17:63119600-63120000	Flanking Active TSS	Fetal Muscle Trunk	muscle
43	chr17:63119600-63120000	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr17:63119600-63120000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr17:63119600-63120000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
46	chr17:63119600-63120000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr17:63119600-63120000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr17:63119600-63120000	Flanking Active TSS	Stomach Mucosa	stomach
49	chr17:63119600-63120000	Flanking Active TSS	HepG2	liver
50	chr17:63119600-63120000	Flanking Active TSS	HUVEC	blood vessel

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