Variant report

Variant	rs4791234
Chromosome Location	chr17:63111811-63111812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63109946..63111950-chr17:63125496..63128407,2	MCF-7	breast:
2	chr17:63104937..63106962-chr17:63110869..63114736,3	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1010271	0.88[AFR][1000 genomes]
rs11079557	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11079559	0.85[AFR][1000 genomes]
rs12451009	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1554048	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1554049	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1561939	0.84[AFR][1000 genomes]
rs1968573	0.91[AFR][1000 genomes]
rs28445249	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4581735	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4791231	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7207632	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7207651	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7207860	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7207995	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7212241	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7215779	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7219245	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7219799	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7219809	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8073607	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8073924	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8075179	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8080637	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8080746	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8081971	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9303478	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9898914	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9899243	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9899401	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9899628	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9912432	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9913707	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9913725	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63097400-63112000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:63097800-63112200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr17:63103000-63118800	Weak transcription	Aorta	Aorta
4	chr17:63103200-63112400	Weak transcription	Ovary	ovary
5	chr17:63103200-63118400	Weak transcription	Left Ventricle	heart
6	chr17:63103200-63118800	Weak transcription	Right Atrium	heart
7	chr17:63103400-63118600	Weak transcription	Brain Anterior Caudate	brain
8	chr17:63103400-63118600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr17:63103800-63118600	Weak transcription	Psoas Muscle	Psoas
10	chr17:63104000-63118600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr17:63104000-63118800	Weak transcription	Colon Smooth Muscle	Colon
12	chr17:63104200-63118600	Weak transcription	Brain Hippocampus Middle	brain
13	chr17:63104400-63118600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:63106200-63119000	Weak transcription	Fetal Lung	lung
15	chr17:63106400-63118600	Weak transcription	Adipose Nuclei	Adipose
16	chr17:63107800-63112200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr17:63108000-63118600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr17:63108400-63112200	Weak transcription	K562	blood
19	chr17:63111200-63112000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:63111200-63112000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr17:63111400-63112400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr17:63111400-63112400	Enhancers	Fetal Brain Male	brain
23	chr17:63111400-63113800	Enhancers	Primary hematopoietic stem cells	blood
24	chr17:63111400-63114000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr17:63111400-63114000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr17:63111600-63112400	Enhancers	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links