Variant report

Variant	rs9899243
Chromosome Location	chr17:63119488-63119489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:39)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:63023375..63025111-chr17:63117678..63119691,2	MCF-7	breast:
2	chr17:63117748..63120899-chr17:63122110..63128969,9	MCF-7	breast:
3	chr17:63119132..63119668-chr7:36429785..36430676,2	NB4	blood:
4	chr17:62969930..62974223-chr17:63117213..63122121,8	MCF-7	breast:
5	chr17:63000197..63002016-chr17:63118020..63120951,2	MCF-7	breast:
6	chr17:63119041..63121818-chr17:63180202..63183514,3	MCF-7	breast:
7	chr17:63118180..63120379-chr17:63138460..63140911,3	MCF-7	breast:
8	chr17:63117665..63121583-chr17:63131912..63139197,8	K562	blood:
9	chr17:63118227..63121662-chr17:63122983..63126434,3	K562	blood:
10	chr17:63119469..63120108-chr20:41117749..41118269,2	HCT-116	colon:
11	chr17:63058260..63060968-chr17:63117386..63120197,2	MCF-7	breast:
12	chr17:63118081..63119679-chr17:63209252..63210860,2	MCF-7	breast:
13	chr17:62983232..62984791-chr17:63118181..63120024,2	MCF-7	breast:
14	chr17:63118160..63120785-chr17:63189536..63191334,2	MCF-7	breast:
15	chr17:62981235..62983059-chr17:63118684..63121178,2	MCF-7	breast:
16	chr17:63117639..63119496-chr17:63177929..63179773,2	MCF-7	breast:
17	chr17:63095279..63098151-chr17:63117643..63122061,8	MCF-7	breast:
18	chr17:63050818..63055787-chr17:63117380..63122567,9	MCF-7	breast:
19	chr17:63103004..63106074-chr17:63118329..63120568,5	MCF-7	breast:
20	chr17:63106164..63108847-chr17:63116672..63121069,3	MCF-7	breast:
21	chr17:63117950..63119799-chr17:63192625..63195137,2	MCF-7	breast:
22	chr17:63095331..63099296-chr17:63117936..63120634,6	MCF-7	breast:
23	chr17:63118932..63120932-chr17:63131317..63133412,3	K562	blood:
24	chr12:56497557..56498361-chr17:63119293..63120050,2	Hela-S3	cervix:
25	chr17:63103464..63106630-chr17:63116614..63119834,3	K562	blood:
26	chr17:63117889..63120887-chr17:63144486..63147111,3	MCF-7	breast:
27	chr17:63061368..63063450-chr17:63117948..63120311,2	MCF-7	breast:
28	chr17:62968870..62973238-chr17:63117876..63121265,6	MCF-7	breast:
29	chr17:63099430..63102253-chr17:63117959..63120208,2	MCF-7	breast:
30	chr17:63073557..63076220-chr17:63118767..63121189,2	MCF-7	breast:
31	chr17:63098255..63100421-chr17:63117323..63119629,3	MCF-7	breast:
32	chr17:63118090..63122363-chr17:63130116..63137221,12	MCF-7	breast:
33	chr17:63118923..63121518-chr17:63126607..63128778,3	K562	blood:
34	chr17:63117696..63121583-chr17:63133620..63139197,5	K562	blood:
35	chr17:63117935..63120127-chr17:63196537..63198308,2	MCF-7	breast:
36	chr17:63046304..63055748-chr17:63116888..63122496,16	MCF-7	breast:
37	chr17:63087175..63090239-chr17:63118301..63120759,3	MCF-7	breast:
38	chr17:62969852..62972063-chr17:63119171..63120865,2	K562	blood:
39	chr17:63030304..63032420-chr17:63118114..63120273,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction
ENSG00000266598	Chromatin interaction
ENSG00000011426	Chromatin interaction
ENSG00000263470	Chromatin interaction
ENSG00000170515	Chromatin interaction
ENSG00000214174	Chromatin interaction
ENSG00000108370	Chromatin interaction
ENSG00000265883	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1010271	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853058	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853059	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079557	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11079558	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079559	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12450928	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451009	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12603197	0.84[AMR][1000 genomes]
rs1530352	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1530353	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1561939	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1968573	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1968574	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28445249	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs299841	0.81[AFR][1000 genomes]
rs429583	1.00[ASN][1000 genomes]
rs4581735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4791231	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4791234	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7207632	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7207651	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7207860	0.82[AMR][1000 genomes]
rs7207995	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7212241	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7215779	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7219245	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219799	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7219809	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8073607	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8073924	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075179	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8080746	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8081971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912432	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63118400-63120000	Active TSS	Rectal Smooth Muscle	rectum
2	chr17:63118600-63119600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:63118600-63119600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr17:63118600-63119600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:63118600-63119600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr17:63118600-63119600	Active TSS	Muscle Satellite Cultured Cells	--
7	chr17:63118600-63119600	Active TSS	Fetal Brain Male	brain
8	chr17:63118600-63119600	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr17:63118600-63119600	Active TSS	A549	lung
10	chr17:63118600-63119600	Active TSS	Osteobl	bone
11	chr17:63118600-63119800	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr17:63118600-63119800	Active TSS	Brain Angular Gyrus	brain
13	chr17:63118600-63119800	Active TSS	Brain Germinal Matrix	brain
14	chr17:63118800-63119600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr17:63118800-63119600	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr17:63118800-63119600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr17:63118800-63119600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr17:63118800-63119600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
19	chr17:63118800-63119600	Active TSS	Cortex derived primary cultured neurospheres	brain
20	chr17:63118800-63119600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr17:63118800-63119600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr17:63118800-63119600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr17:63118800-63119600	Active TSS	Brain Cingulate Gyrus	brain
24	chr17:63118800-63119600	Active TSS	Fetal Intestine Small	intestine
25	chr17:63118800-63119600	Active TSS	Fetal Kidney	kidney
26	chr17:63118800-63119600	Active TSS	Fetal Stomach	stomach
27	chr17:63118800-63119600	Active TSS	Left Ventricle	heart
28	chr17:63118800-63119600	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr17:63118800-63119600	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr17:63118800-63119600	Active TSS	Hela-S3	cervix
31	chr17:63118800-63119600	Active TSS	HSMM	muscle
32	chr17:63118800-63119600	Active TSS	K562	blood
33	chr17:63118800-63119600	Active TSS	NHEK	skin
34	chr17:63118800-63119800	Active TSS	H1 Cell Line	embryonic stem cell
35	chr17:63118800-63119800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr17:63118800-63119800	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr17:63118800-63119800	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr17:63118800-63119800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr17:63118800-63119800	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr17:63118800-63119800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr17:63118800-63119800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr17:63118800-63119800	Active TSS	Aorta	Aorta
43	chr17:63118800-63119800	Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr17:63118800-63119800	Active TSS	Ovary	ovary
45	chr17:63118800-63119800	Active TSS	Placenta Amnion	Placenta Amnion
46	chr17:63118800-63119800	Active TSS	Psoas Muscle	Psoas
47	chr17:63118800-63119800	Active TSS	Right Ventricle	heart
48	chr17:63118800-63120000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr17:63118800-63120000	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr17:63118800-63120000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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