Variant report

Variant	rs1108072
Chromosome Location	chr8:36027620-36027621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10103388	0.96[ASN][1000 genomes]
rs10111851	0.96[ASN][1000 genomes]
rs12674672	0.88[ASN][1000 genomes]
rs2017573	1.00[EUR][1000 genomes]
rs2702470	0.97[ASN][1000 genomes]
rs2702491	0.96[ASN][1000 genomes]
rs2702496	0.96[ASN][1000 genomes]
rs2843885	0.95[ASN][1000 genomes]
rs2843886	0.96[ASN][1000 genomes]
rs2843887	0.96[ASN][1000 genomes]
rs2843924	0.84[AMR][1000 genomes]
rs589543	0.82[ASN][1000 genomes]
rs6991760	0.84[ASN][1000 genomes]
rs73580494	1.00[EUR][1000 genomes]
rs7827472	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1024552	chr8:35655964-36210907	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv539548	chr8:35655964-36210907	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv890718	chr8:35948467-36224134	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:36027000-36028000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:36027000-36028000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:36027400-36030800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:36027600-36028800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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