Variant report
Variant | rs73580494 |
---|---|
Chromosome Location | chr8:35968585-35968586 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10097615 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs10103388 | 0.80[AFR][1000 genomes] |
rs10106813 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs10111851 | 0.80[AFR][1000 genomes] |
rs10156266 | 0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs1108072 | 1.00[EUR][1000 genomes] |
rs2017573 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2843924 | 0.94[ASN][1000 genomes] |
rs28480588 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs28576407 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs6985277 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs7825484 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
rs7827472 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv533420 | chr8:35358115-36227536 | Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
2 | nsv1024552 | chr8:35655964-36210907 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
3 | nsv539548 | chr8:35655964-36210907 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | esv3335918 | chr8:35944459-35979115 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv890718 | chr8:35948467-36224134 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:35967000-35968600 | Enhancers | Liver | Liver |