Variant report

Variant	rs11082490
Chromosome Location	chr18:43412628-43412629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1055066	1.00[CEU][hapmap]
rs10853537	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11082478	0.90[JPT][hapmap]
rs11082489	0.84[CHD][hapmap];0.87[MEX][hapmap]
rs11082491	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11082492	0.81[AMR][1000 genomes]
rs11661333	1.00[CEU][hapmap]
rs12455488	0.80[EUR][1000 genomes]
rs12456289	0.80[EUR][1000 genomes]
rs12458195	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12604912	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1371976	1.00[CEU][hapmap]
rs1660561	0.87[CEU][hapmap]
rs1790299	0.87[CEU][hapmap]
rs1893523	1.00[CEU][hapmap]
rs34185907	0.80[EUR][1000 genomes]
rs35316177	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs492411	0.87[CEU][hapmap]
rs500899	0.87[CEU][hapmap]
rs507653	0.87[CEU][hapmap];0.87[MEX][hapmap]
rs570975	0.87[CEU][hapmap]
rs571690	0.87[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.80[AMR][1000 genomes]
rs61104666	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7233909	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs8083287	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8085782	1.00[CEU][hapmap];0.86[GIH][hapmap];0.92[MEX][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8095439	0.80[EUR][1000 genomes]
rs8099496	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9950673	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9958081	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43408400-43413400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr18:43408400-43415400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr18:43408400-43417400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:43408800-43414600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr18:43408800-43416400	Enhancers	Fetal Intestine Small	intestine
6	chr18:43409400-43414600	Weak transcription	Liver	Liver
7	chr18:43409400-43415400	Weak transcription	Colon Smooth Muscle	Colon
8	chr18:43409400-43418000	Weak transcription	NHDF-Ad	bronchial
9	chr18:43409600-43414000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr18:43409600-43414000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr18:43409800-43414200	Weak transcription	HMEC	breast
12	chr18:43409800-43414600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr18:43409800-43416600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr18:43409800-43417400	Weak transcription	Pancreas	Pancrea
15	chr18:43410000-43414000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr18:43410200-43414200	Weak transcription	Thymus	Thymus
17	chr18:43410200-43414400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr18:43410200-43414400	Weak transcription	Small Intestine	intestine
19	chr18:43410400-43412800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr18:43410400-43413000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr18:43410400-43414200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr18:43410400-43414400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr18:43410400-43417400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr18:43411600-43412800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr18:43412000-43417400	Enhancers	Duodenum Mucosa	Duodenum
26	chr18:43412000-43418000	Enhancers	Stomach Mucosa	stomach
27	chr18:43412400-43413000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr18:43412400-43413000	Enhancers	Gastric	stomach
29	chr18:43412400-43413200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr18:43412600-43412800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
31	chr18:43412600-43413000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr18:43412600-43413000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr18:43412600-43413200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr18:43412600-43413200	Enhancers	NH-A	brain
35	chr18:43412600-43413200	Enhancers	Osteobl	bone
36	chr18:43412600-43416600	Enhancers	Fetal Intestine Large	intestine
37	chr18:43412600-43417400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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