Variant report

Variant	rs11082492
Chromosome Location	chr18:43455229-43455230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10432160	0.95[JPT][hapmap]
rs10432197	0.94[JPT][hapmap]
rs1055066	1.00[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap]
rs10853537	1.00[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11082490	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11082491	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11082493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11082497	0.82[EUR][1000 genomes]
rs11661333	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs11665273	0.82[EUR][1000 genomes]
rs12455488	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12456289	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12458195	1.00[CEU][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.86[MEX][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12604880	0.82[EUR][1000 genomes]
rs12604912	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12953791	0.82[EUR][1000 genomes]
rs12954728	0.82[EUR][1000 genomes]
rs1371976	1.00[CEU][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs1660561	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1790299	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1893523	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs2958437	0.81[ASN][1000 genomes]
rs34185907	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35316177	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3744996	0.82[EUR][1000 genomes]
rs3826634	0.82[EUR][1000 genomes]
rs492411	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs500899	0.87[CEU][hapmap]
rs507653	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs570975	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs571690	0.87[CEU][hapmap];0.82[CHD][hapmap]
rs57484487	0.82[EUR][1000 genomes]
rs61104666	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6507652	0.84[JPT][hapmap]
rs7233909	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7238229	0.82[EUR][1000 genomes]
rs8083287	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8085782	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.85[AMR][1000 genomes]
rs8086343	0.82[EUR][1000 genomes]
rs8093119	0.95[JPT][hapmap]
rs8095439	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8097963	0.82[EUR][1000 genomes]
rs8099496	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9955285	0.84[JPT][hapmap]
rs9958081	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9963463	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43420200-43491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr18:43428200-43455600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr18:43428400-43467800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr18:43429000-43464800	Strong transcription	Fetal Intestine Large	intestine
5	chr18:43429200-43462400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr18:43429200-43464800	Strong transcription	HSMM	muscle
7	chr18:43429200-43473200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr18:43429400-43468600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr18:43431600-43456800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:43432000-43470400	Strong transcription	Adipose Nuclei	Adipose
11	chr18:43435600-43458400	Weak transcription	Psoas Muscle	Psoas
12	chr18:43440600-43489600	Weak transcription	Small Intestine	intestine
13	chr18:43442200-43457200	Strong transcription	Fetal Muscle Leg	muscle
14	chr18:43442400-43500200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr18:43443600-43457800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr18:43445600-43478000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr18:43445800-43483800	Weak transcription	K562	blood
18	chr18:43446200-43479400	Weak transcription	Fetal Brain Male	brain
19	chr18:43446800-43456000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr18:43447000-43460400	Weak transcription	Pancreas	Pancrea
21	chr18:43447000-43478400	Weak transcription	Stomach Mucosa	stomach
22	chr18:43447000-43491800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr18:43447600-43464000	Weak transcription	Aorta	Aorta
24	chr18:43447600-43469000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr18:43447800-43455400	Weak transcription	HepG2	liver
26	chr18:43448000-43458800	Weak transcription	HUVEC	blood vessel
27	chr18:43448200-43464000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr18:43448200-43464200	Weak transcription	Brain Angular Gyrus	brain
29	chr18:43448400-43459600	Strong transcription	Liver	Liver
30	chr18:43449200-43456200	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr18:43449600-43465000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr18:43449600-43465000	Strong transcription	Placenta	Placenta
33	chr18:43450000-43455400	Strong transcription	HSMMtube	muscle
34	chr18:43450000-43459400	Strong transcription	NHLF	lung
35	chr18:43450200-43457800	Strong transcription	Thymus	Thymus
36	chr18:43450800-43478000	Weak transcription	Right Ventricle	heart
37	chr18:43451800-43457600	Weak transcription	Fetal Heart	heart
38	chr18:43451800-43519600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr18:43452000-43459200	Strong transcription	NHDF-Ad	bronchial
40	chr18:43452000-43479000	Weak transcription	HMEC	breast
41	chr18:43452200-43457400	Strong transcription	Fetal Intestine Small	intestine
42	chr18:43452200-43464800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr18:43452400-43455400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr18:43452400-43455800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr18:43452400-43470400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr18:43452600-43456600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr18:43452800-43455400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr18:43452800-43455600	Genic enhancers	Primary T cells from cord blood	blood
49	chr18:43452800-43464800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr18:43453400-43459600	Strong transcription	Fetal Thymus	thymus

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