Variant report

Variant	rs2958437
Chromosome Location	chr18:43428936-43428937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10853537	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11082491	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11082492	0.81[ASN][1000 genomes]
rs12455488	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12456289	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12458195	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12604912	0.90[ASN][1000 genomes]
rs1660561	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1790299	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2919643	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34185907	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35316177	0.90[ASN][1000 genomes]
rs492411	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs500899	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs507653	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs570975	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs571690	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61104666	0.90[ASN][1000 genomes]
rs7233909	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8083287	0.95[ASN][1000 genomes]
rs8085782	0.82[ASN][1000 genomes]
rs8095439	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8099496	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9950673	0.86[ASN][1000 genomes]
rs9958081	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43418400-43439000	Weak transcription	A549	lung
2	chr18:43418600-43437400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:43419000-43429800	Weak transcription	Aorta	Aorta
4	chr18:43419200-43434000	Weak transcription	Small Intestine	intestine
5	chr18:43419400-43429600	Weak transcription	Right Ventricle	heart
6	chr18:43419600-43429400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr18:43419600-43429600	Weak transcription	Gastric	stomach
8	chr18:43419600-43429800	Weak transcription	Left Ventricle	heart
9	chr18:43419800-43431400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr18:43420000-43429200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr18:43420000-43429200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr18:43420000-43429400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr18:43420000-43432400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:43420000-43436200	Weak transcription	Hela-S3	cervix
15	chr18:43420200-43429600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr18:43420200-43431200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr18:43420200-43491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr18:43420600-43429200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr18:43420600-43429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr18:43420600-43429200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr18:43420600-43429200	Weak transcription	HSMM	muscle
22	chr18:43420600-43429400	Weak transcription	NHDF-Ad	bronchial
23	chr18:43420800-43429200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr18:43420800-43429200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr18:43420800-43429200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr18:43420800-43435400	Weak transcription	HMEC	breast
27	chr18:43420800-43442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr18:43421000-43429000	Weak transcription	Brain Germinal Matrix	brain
29	chr18:43421200-43429200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr18:43421200-43429600	Weak transcription	Brain Substantia Nigra	brain
31	chr18:43421200-43431200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:43421400-43429400	Weak transcription	HSMMtube	muscle
33	chr18:43421600-43429200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr18:43422000-43429200	Weak transcription	Fetal Brain Female	brain
35	chr18:43422600-43432400	Weak transcription	Fetal Kidney	kidney
36	chr18:43422800-43429200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr18:43422800-43429600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr18:43423000-43429600	Weak transcription	Fetal Lung	lung
39	chr18:43423000-43429800	Weak transcription	Primary B cells from cord blood	blood
40	chr18:43423200-43429200	Weak transcription	Liver	Liver
41	chr18:43423200-43429400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr18:43423400-43429000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr18:43423400-43429000	Weak transcription	Brain Hippocampus Middle	brain
44	chr18:43423400-43429000	Weak transcription	Fetal Intestine Large	intestine
45	chr18:43423400-43429000	Weak transcription	Fetal Stomach	stomach
46	chr18:43423400-43432400	Weak transcription	HepG2	liver
47	chr18:43423600-43429200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr18:43423600-43429400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr18:43423800-43429200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr18:43423800-43429400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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