Variant report

Variant	rs11082491
Chromosome Location	chr18:43433547-43433548
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10432160	0.81[JPT][hapmap]
rs1055066	1.00[CEU][hapmap]
rs10853537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11082490	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11082492	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11082493	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11661333	1.00[CEU][hapmap]
rs12455488	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12456289	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12458195	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12604912	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1371976	1.00[CEU][hapmap]
rs1660561	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1790299	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1893523	1.00[CEU][hapmap]
rs2919643	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2958437	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34185907	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35316177	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs492411	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs500899	0.88[CEU][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs507653	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs570975	0.88[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs571690	0.87[CEU][hapmap];0.81[CHB][hapmap];0.81[ASN][1000 genomes]
rs61104666	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7233909	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8083287	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8085782	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8093119	0.81[JPT][hapmap]
rs8095439	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8099496	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9950673	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9958081	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525268	chr18:42748365-43474795	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43418400-43439000	Weak transcription	A549	lung
2	chr18:43418600-43437400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr18:43419200-43434000	Weak transcription	Small Intestine	intestine
4	chr18:43420000-43436200	Weak transcription	Hela-S3	cervix
5	chr18:43420200-43491800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:43420800-43435400	Weak transcription	HMEC	breast
7	chr18:43420800-43442000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr18:43425800-43437400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr18:43426000-43438200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr18:43426400-43435000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr18:43426400-43446000	Weak transcription	Stomach Mucosa	stomach
12	chr18:43427000-43435200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr18:43427000-43441600	Strong transcription	Fetal Muscle Trunk	muscle
14	chr18:43427200-43434000	Weak transcription	Brain Angular Gyrus	brain
15	chr18:43427200-43436600	Weak transcription	HUVEC	blood vessel
16	chr18:43427600-43435000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr18:43427600-43436200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr18:43427800-43441200	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr18:43428000-43441200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr18:43428000-43448400	Strong transcription	Primary T cells from cord blood	blood
21	chr18:43428200-43435800	Strong transcription	Pancreas	Pancrea
22	chr18:43428200-43437800	Weak transcription	K562	blood
23	chr18:43428200-43440400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr18:43428200-43448200	Strong transcription	Placenta	Placenta
25	chr18:43428200-43455600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr18:43428400-43448400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr18:43428400-43467800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr18:43428600-43434800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr18:43428600-43435800	Strong transcription	Spleen	Spleen
30	chr18:43428600-43440600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr18:43428600-43442800	Strong transcription	Thymus	Thymus
32	chr18:43428600-43448800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr18:43429000-43441400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr18:43429000-43448200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr18:43429000-43454600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr18:43429000-43464800	Strong transcription	Fetal Intestine Large	intestine
37	chr18:43429200-43434200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr18:43429200-43435800	Strong transcription	Esophagus	oesophagus
39	chr18:43429200-43436000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr18:43429200-43440400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr18:43429200-43440600	Strong transcription	Fetal Muscle Leg	muscle
42	chr18:43429200-43440800	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr18:43429200-43440800	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr18:43429200-43441200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr18:43429200-43443600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:43429200-43444000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr18:43429200-43448200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr18:43429200-43448400	Strong transcription	Dnd41	blood
49	chr18:43429200-43451800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr18:43429200-43451800	Strong transcription	Fetal Thymus	thymus

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