Variant report

Variant	rs1108315
Chromosome Location	chr11:119852731-119852732
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11217596	1.00[EUR][1000 genomes]
rs11217597	1.00[EUR][1000 genomes]
rs11217604	1.00[EUR][1000 genomes]
rs11217606	1.00[EUR][1000 genomes]
rs11217607	1.00[EUR][1000 genomes]
rs11217611	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11217614	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11217615	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11217619	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11217624	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11217626	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11217628	1.00[EUR][1000 genomes]
rs12224282	1.00[EUR][1000 genomes]
rs12573850	1.00[EUR][1000 genomes]
rs12574341	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12574743	1.00[EUR][1000 genomes]
rs12575504	1.00[EUR][1000 genomes]
rs12576429	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12576741	1.00[EUR][1000 genomes]
rs17123510	1.00[EUR][1000 genomes]
rs36015387	1.00[EUR][1000 genomes]
rs56683142	1.00[EUR][1000 genomes]
rs58861512	1.00[EUR][1000 genomes]
rs60280067	1.00[EUR][1000 genomes]
rs72645471	1.00[EUR][1000 genomes]
rs72645472	1.00[EUR][1000 genomes]
rs72645473	1.00[EUR][1000 genomes]
rs72645474	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72645475	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72645476	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72645477	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1037777	chr11:119842515-119898368	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541179	chr11:119842515-119898368	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119846200-119853000	Enhancers	Fetal Intestine Large	intestine
2	chr11:119846400-119853000	Enhancers	Fetal Intestine Small	intestine
3	chr11:119846800-119853200	Weak transcription	Fetal Brain Female	brain
4	chr11:119846800-119858600	Weak transcription	Fetal Heart	heart
5	chr11:119847800-119853400	Weak transcription	Brain Anterior Caudate	brain
6	chr11:119848400-119853200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:119848400-119854200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:119849200-119853200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:119849200-119853400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:119850400-119853000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:119850600-119853200	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:119851400-119855400	Enhancers	Brain Germinal Matrix	brain
13	chr11:119851800-119853400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:119852600-119852800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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