Variant report

Variant	rs12574743
Chromosome Location	chr11:119835792-119835793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119833649..119836146-chr11:119840215..119843105,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10892503	0.84[ASN][1000 genomes]
rs1108315	1.00[EUR][1000 genomes]
rs11217593	0.90[ASN][1000 genomes]
rs11217596	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11217597	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11217604	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217606	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217607	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217611	1.00[EUR][1000 genomes]
rs11217614	1.00[EUR][1000 genomes]
rs11217615	1.00[EUR][1000 genomes]
rs11217619	1.00[EUR][1000 genomes]
rs11217624	1.00[EUR][1000 genomes]
rs11217626	1.00[EUR][1000 genomes]
rs11217628	1.00[EUR][1000 genomes]
rs12224282	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12573850	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12574341	1.00[EUR][1000 genomes]
rs12575504	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576429	1.00[EUR][1000 genomes]
rs12576741	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17123510	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36015387	1.00[EUR][1000 genomes]
rs56683142	1.00[EUR][1000 genomes]
rs58861512	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60280067	1.00[EUR][1000 genomes]
rs72645469	0.92[ASN][1000 genomes]
rs72645470	1.00[ASN][1000 genomes]
rs72645471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72645472	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72645473	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72645474	1.00[EUR][1000 genomes]
rs72645475	1.00[EUR][1000 genomes]
rs72645476	1.00[EUR][1000 genomes]
rs72645477	1.00[EUR][1000 genomes]
rs7931873	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119833400-119836400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119834200-119836200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:119834200-119836600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:119834200-119837200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:119834400-119836000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:119834400-119836200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr11:119834400-119836400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:119834600-119836200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:119834600-119836400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:119834600-119836400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:119834600-119836400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:119834600-119836400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:119834800-119836000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr11:119835000-119836000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:119835000-119836200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr11:119835200-119835800	Enhancers	Adipose Nuclei	Adipose
17	chr11:119835200-119836000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr11:119835200-119836000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr11:119835200-119836000	Enhancers	Psoas Muscle	Psoas
20	chr11:119835200-119836000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:119835200-119836200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:119835400-119836200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr11:119835600-119835800	Enhancers	Fetal Thymus	thymus
24	chr11:119835600-119836000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:119835600-119836400	Enhancers	H9 Cell Line	embryonic stem cell

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