Variant report

Variant	rs12573850
Chromosome Location	chr11:119832557-119832558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10892503	0.86[ASN][1000 genomes]
rs1108315	1.00[EUR][1000 genomes]
rs11217593	0.91[ASN][1000 genomes]
rs11217596	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217597	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11217604	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217606	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217607	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217611	1.00[EUR][1000 genomes]
rs11217614	1.00[EUR][1000 genomes]
rs11217615	1.00[EUR][1000 genomes]
rs11217619	1.00[EUR][1000 genomes]
rs11217624	1.00[EUR][1000 genomes]
rs11217626	1.00[EUR][1000 genomes]
rs11217628	1.00[EUR][1000 genomes]
rs12224282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12574341	1.00[EUR][1000 genomes]
rs12574743	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12575504	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576429	1.00[EUR][1000 genomes]
rs12576741	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17123510	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36015387	1.00[EUR][1000 genomes]
rs56683142	1.00[EUR][1000 genomes]
rs58861512	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60280067	1.00[EUR][1000 genomes]
rs72645469	0.94[ASN][1000 genomes]
rs72645470	0.98[ASN][1000 genomes]
rs72645471	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72645472	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72645473	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72645474	1.00[EUR][1000 genomes]
rs72645475	1.00[EUR][1000 genomes]
rs72645476	1.00[EUR][1000 genomes]
rs72645477	1.00[EUR][1000 genomes]
rs7931873	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv832285	chr11:119789595-119957724	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119817200-119835600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:119831200-119833000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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