Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25162684..25164413-chr18:25168896..25171426,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11083216	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12455678	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12456956	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16943751	0.96[ASN][1000 genomes]
rs16943820	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16943845	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2287295	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62080906	0.96[ASN][1000 genomes]
rs62080907	0.95[ASN][1000 genomes]
rs62080908	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62080909	0.95[ASN][1000 genomes]
rs62080910	0.95[ASN][1000 genomes]
rs7231167	0.94[ASN][1000 genomes]
rs8087249	0.97[ASN][1000 genomes]
rs8088013	0.97[ASN][1000 genomes]
rs8088837	0.88[ASN][1000 genomes]
rs8092173	0.99[ASN][1000 genomes]
rs8092333	0.97[ASN][1000 genomes]
rs8099800	0.90[ASN][1000 genomes]
rs9956311	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25159000-25167400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25162600-25168000	Enhancers	Fetal Intestine Large	intestine
3	chr18:25163600-25165600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr18:25163800-25165600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:25164000-25165800	Enhancers	Fetal Intestine Small	intestine
6	chr18:25164000-25166800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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