Variant report
| Variant | rs16943845 |
|---|---|
| Chromosome Location | chr18:25191923-25191924 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11083216 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11083218 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12455678 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12456956 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs16943751 | 0.94[ASN][1000 genomes] |
| rs16943820 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2287295 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs62080906 | 0.94[ASN][1000 genomes] |
| rs62080907 | 0.93[ASN][1000 genomes] |
| rs62080908 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs62080909 | 0.93[ASN][1000 genomes] |
| rs62080910 | 0.93[ASN][1000 genomes] |
| rs7231167 | 0.92[ASN][1000 genomes] |
| rs8087249 | 0.95[ASN][1000 genomes] |
| rs8088013 | 0.95[ASN][1000 genomes] |
| rs8088837 | 0.86[ASN][1000 genomes] |
| rs8092173 | 0.93[ASN][1000 genomes] |
| rs8092333 | 0.95[ASN][1000 genomes] |
| rs8099800 | 0.98[ASN][1000 genomes] |
| rs9956311 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2761996 | chr18:24866083-25818618 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs16943845 | ANKRD29 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:25185200-25195000 | Weak transcription | H9 Cell Line | embryonic stem cell |
