Variant report

Variant	rs11084447
Chromosome Location	chr19:56918142-56918143
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:56914950..56917627-chr19:56917967..56921707,4	K562	blood:

Variant related genes	Relation type
ENSG00000198440	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11084448	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12709959	0.82[ASN][1000 genomes]
rs12979827	0.82[ASN][1000 genomes]
rs12984960	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2215410	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2288862	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2288863	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28815239	0.85[ASN][1000 genomes]
rs4239475	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4801159	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4801160	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4801161	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4801316	0.83[ASN][1000 genomes]
rs4801318	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4801720	0.83[ASN][1000 genomes]
rs62121591	0.88[ASN][1000 genomes]
rs62121592	0.85[ASN][1000 genomes]
rs62121594	0.85[ASN][1000 genomes]
rs6509995	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7246353	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7253851	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912516	chr19:56601298-56981382	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
2	nsv949121	chr19:56754719-57591038	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
3	nsv1062341	chr19:56794070-57273332	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	nsv544094	chr19:56794070-57273332	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
5	nsv1056713	chr19:56799151-57265682	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv544095	chr19:56799151-57265682	Strong transcription ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv544096	chr19:56905651-56933455	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
8	esv3373403	chr19:56913940-56918638	Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56915800-56924200	ZNF genes & repeats	Fetal Brain Male	brain
2	chr19:56915800-56927000	ZNF genes & repeats	HSMM	muscle
3	chr19:56916000-56938600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:56916200-56919000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr19:56916200-56920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:56916400-56918200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr19:56916400-56918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:56916400-56918400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr19:56916400-56918400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr19:56916400-56918600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr19:56916400-56918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr19:56916400-56920400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
13	chr19:56916400-56926200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:56916400-56927000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
15	chr19:56916400-56929800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:56916400-56936600	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr19:56916400-56956000	ZNF genes & repeats	Liver	Liver
18	chr19:56916600-56918200	Weak transcription	Colonic Mucosa	Colon
19	chr19:56916600-56918400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:56916600-56918400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr19:56916600-56918400	Weak transcription	Osteobl	bone
22	chr19:56916600-56920000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr19:56916600-56920200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:56916600-56935600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr19:56916600-56956000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr19:56916800-56918200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:56916800-56918200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr19:56916800-56918200	Weak transcription	Brain Anterior Caudate	brain
29	chr19:56916800-56918200	Weak transcription	Fetal Muscle Trunk	muscle
30	chr19:56916800-56918200	Weak transcription	Left Ventricle	heart
31	chr19:56916800-56918200	Weak transcription	Ovary	ovary
32	chr19:56916800-56918200	Weak transcription	HSMMtube	muscle
33	chr19:56916800-56918400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr19:56916800-56918400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:56916800-56918400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr19:56916800-56918400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:56916800-56918400	Weak transcription	NH-A	brain
38	chr19:56916800-56918600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr19:56916800-56918600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr19:56916800-56918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr19:56916800-56918600	Weak transcription	Brain Substantia Nigra	brain
42	chr19:56916800-56918600	Weak transcription	NHEK	skin
43	chr19:56916800-56918800	Weak transcription	Fetal Thymus	thymus
44	chr19:56916800-56919600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr19:56916800-56920000	Weak transcription	Pancreas	Pancrea
46	chr19:56916800-56921800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr19:56917000-56918200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr19:56917000-56918400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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