Variant report
| Variant | rs1108794 |
|---|---|
| Chromosome Location | chr18:45095131-45095132 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11082608 | 0.88[EUR][1000 genomes] |
| rs11082609 | 0.89[EUR][1000 genomes] |
| rs1510014 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs16954251 | 0.81[EUR][1000 genomes] |
| rs16954613 | 0.92[EUR][1000 genomes] |
| rs16954994 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs59194254 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6507765 | 0.84[EUR][1000 genomes] |
| rs7230633 | 0.89[EUR][1000 genomes] |
| rs7236741 | 0.87[EUR][1000 genomes] |
| rs7505509 | 0.84[EUR][1000 genomes] |
| rs8090686 | 0.91[EUR][1000 genomes] |
| rs8092757 | 0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8094987 | 0.84[EUR][1000 genomes] |
| rs8095159 | 0.81[EUR][1000 genomes] |
| rs8096375 | 0.87[EUR][1000 genomes] |
| rs880876 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3316797 | chr18:45094836-45095246 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 2 | esv3316800 | chr18:45094890-45095222 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 3 | esv3316798 | chr18:45094912-45095179 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | esv3316799 | chr18:45094961-45095155 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3316801 | chr18:45094975-45095155 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3316804 | chr18:45095098-45096190 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1108794 | ACAA2 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:45090200-45103000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
