Variant report

Variant	rs11088441
Chromosome Location	chr21:16915945-16915946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16912535..16914166-chr21:16914818..16917552,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1076607	0.84[AFR][1000 genomes]
rs10854386	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11088442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11088443	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11088447	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11909880	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11911998	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11912014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12151954	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1556288	0.84[EUR][1000 genomes]
rs2243319	0.84[AFR][1000 genomes]
rs2823325	0.92[EUR][1000 genomes]
rs2823326	0.92[EUR][1000 genomes]
rs2823333	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823335	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823337	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2823342	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2823347	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2823348	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2823350	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2823352	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2823359	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2823361	0.93[EUR][1000 genomes]
rs4816600	0.92[EUR][1000 genomes]
rs56116400	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57533932	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61412083	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61704885	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16915400-16922200	Weak transcription	Colon Smooth Muscle	Colon
2	chr21:16915600-16916000	Active TSS	Hela-S3	cervix
3	chr21:16915600-16916000	Enhancers	HepG2	liver
4	chr21:16915800-16916000	Enhancers	Esophagus	oesophagus

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