Variant report

Variant	rs57533932
Chromosome Location	chr21:16910749-16910750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16909677..16914012-chr21:16918687..16921004,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10854386	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11088441	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11088442	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11088443	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11088447	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11909880	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11911998	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11912014	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12151954	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1556288	0.83[EUR][1000 genomes]
rs17275302	0.81[ASN][1000 genomes]
rs2823325	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2823326	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2823333	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2823335	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2823337	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2823342	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2823347	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823348	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823350	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823352	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823359	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2823361	0.91[EUR][1000 genomes]
rs4816600	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56116400	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61412083	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61704885	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16908200-16911600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16908200-16911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16909400-16911400	Weak transcription	Dnd41	blood
4	chr21:16909400-16911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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