Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1076605	0.81[AFR][1000 genomes]
rs10854388	0.85[AFR][1000 genomes]
rs11088441	0.84[EUR][1000 genomes]
rs11088442	0.84[EUR][1000 genomes]
rs11088443	0.84[EUR][1000 genomes]
rs11088447	0.83[EUR][1000 genomes]
rs11909880	0.83[EUR][1000 genomes]
rs11911998	0.82[EUR][1000 genomes]
rs11912014	0.83[EUR][1000 genomes]
rs12151954	0.83[EUR][1000 genomes]
rs2823342	0.83[EUR][1000 genomes]
rs2823347	0.83[EUR][1000 genomes]
rs2823348	0.83[EUR][1000 genomes]
rs2823350	0.83[EUR][1000 genomes]
rs2823352	0.83[EUR][1000 genomes]
rs2823359	0.83[EUR][1000 genomes]
rs2823361	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57533932	0.83[EUR][1000 genomes]
rs61412083	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61704885	0.83[EUR][1000 genomes]
rs9976620	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16915400-16922200	Weak transcription	Colon Smooth Muscle	Colon

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