Variant report

Variant	rs11097592
Chromosome Location	chr4:98927532-98927533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 241 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs10000573	0.87[ASN][1000 genomes]
rs10004827	0.87[ASN][1000 genomes]
rs10005118	0.87[ASN][1000 genomes]
rs10005120	0.87[ASN][1000 genomes]
rs10007872	0.91[ASN][1000 genomes]
rs10009206	0.87[ASN][1000 genomes]
rs10012003	0.87[ASN][1000 genomes]
rs10012167	0.87[ASN][1000 genomes]
rs10012271	0.87[ASN][1000 genomes]
rs10017530	0.92[ASN][1000 genomes]
rs10018654	0.91[ASN][1000 genomes]
rs10021044	0.91[ASN][1000 genomes]
rs10025364	0.98[ASN][1000 genomes]
rs10025651	0.92[ASN][1000 genomes]
rs10029849	0.87[ASN][1000 genomes]
rs10031292	0.87[ASN][1000 genomes]
rs10033994	0.93[ASN][1000 genomes]
rs10034330	0.87[ASN][1000 genomes]
rs10034619	0.93[ASN][1000 genomes]
rs10049627	0.89[ASN][1000 genomes]
rs10050008	0.89[ASN][1000 genomes]
rs11097614	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs11097615	0.84[ASN][1000 genomes]
rs1111541	0.89[ASN][1000 genomes]
rs11721453	0.87[ASN][1000 genomes]
rs11726758	0.89[ASN][1000 genomes]
rs11727653	0.91[ASN][1000 genomes]
rs11729596	0.87[ASN][1000 genomes]
rs11729640	0.87[ASN][1000 genomes]
rs11735105	0.97[ASN][1000 genomes]
rs11932887	0.87[ASN][1000 genomes]
rs11932942	0.91[ASN][1000 genomes]
rs11941885	0.94[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs11941961	0.87[ASN][1000 genomes]
rs11942114	0.87[ASN][1000 genomes]
rs11944855	0.87[ASN][1000 genomes]
rs13102369	0.87[ASN][1000 genomes]
rs13108422	0.87[ASN][1000 genomes]
rs13108535	0.87[ASN][1000 genomes]
rs13108868	0.85[CHB][hapmap]
rs13110418	0.85[ASN][1000 genomes]
rs13115356	0.98[ASN][1000 genomes]
rs13118892	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13118945	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13121558	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13121766	0.98[ASN][1000 genomes]
rs13122456	0.98[ASN][1000 genomes]
rs13122897	0.98[ASN][1000 genomes]
rs13127542	0.95[ASN][1000 genomes]
rs13130923	0.87[ASN][1000 genomes]
rs13131962	0.87[ASN][1000 genomes]
rs13132395	0.85[ASN][1000 genomes]
rs13133619	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs13136721	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs13136930	0.97[ASN][1000 genomes]
rs13137152	0.97[ASN][1000 genomes]
rs13137808	0.86[ASN][1000 genomes]
rs13137859	0.87[ASN][1000 genomes]
rs13138051	0.87[ASN][1000 genomes]
rs13138059	0.87[ASN][1000 genomes]
rs13138063	0.87[ASN][1000 genomes]
rs13138438	0.87[ASN][1000 genomes]
rs13146909	0.98[ASN][1000 genomes]
rs13147921	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13149404	0.87[ASN][1000 genomes]
rs13149968	0.95[CHB][hapmap];0.97[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1349757	0.87[ASN][1000 genomes]
rs1426666	0.89[ASN][1000 genomes]
rs1527515	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1527516	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1534319	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027308	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs17484890	0.89[ASN][1000 genomes]
rs17484966	0.89[ASN][1000 genomes]
rs17486413	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs17549003	0.93[ASN][1000 genomes]
rs17550217	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17550735	0.89[ASN][1000 genomes]
rs17558151	0.87[ASN][1000 genomes]
rs17558193	0.87[ASN][1000 genomes]
rs1834648	0.87[ASN][1000 genomes]
rs2114426	0.98[ASN][1000 genomes]
rs2167892	0.87[ASN][1000 genomes]
rs2839836	0.93[ASN][1000 genomes]
rs28415600	0.89[ASN][1000 genomes]
rs28485415	0.87[ASN][1000 genomes]
rs2865981	0.89[ASN][1000 genomes]
rs2865982	0.89[ASN][1000 genomes]
rs2865983	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2865985	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2865986	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2865987	0.87[ASN][1000 genomes]
rs2865988	0.95[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2865989	0.87[ASN][1000 genomes]
rs2865990	0.80[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2865991	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2865993	0.87[ASN][1000 genomes]
rs28729647	0.87[ASN][1000 genomes]
rs28758886	0.87[ASN][1000 genomes]
rs28791018	0.89[ASN][1000 genomes]
rs28792413	0.84[ASN][1000 genomes]
rs2903152	0.95[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs2903154	0.87[ASN][1000 genomes]
rs34164616	0.89[ASN][1000 genomes]
rs34212748	0.87[ASN][1000 genomes]
rs34313689	0.89[ASN][1000 genomes]
rs34423396	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34509663	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34528953	0.98[ASN][1000 genomes]
rs34870112	0.87[ASN][1000 genomes]
rs34892904	0.97[ASN][1000 genomes]
rs34943050	0.88[ASN][1000 genomes]
rs35235971	0.91[ASN][1000 genomes]
rs35276471	0.87[ASN][1000 genomes]
rs35433756	0.87[ASN][1000 genomes]
rs35436270	0.84[ASN][1000 genomes]
rs35491210	0.91[ASN][1000 genomes]
rs35531558	0.97[ASN][1000 genomes]
rs35560671	0.87[ASN][1000 genomes]
rs35721906	0.98[ASN][1000 genomes]
rs35752787	0.98[ASN][1000 genomes]
rs35865860	0.93[ASN][1000 genomes]
rs35951881	0.91[ASN][1000 genomes]
rs36028444	0.93[ASN][1000 genomes]
rs3846443	0.89[ASN][1000 genomes]
rs3846444	0.89[ASN][1000 genomes]
rs3846445	0.89[ASN][1000 genomes]
rs3857216	0.89[ASN][1000 genomes]
rs3857217	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3896704	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3911282	0.87[ASN][1000 genomes]
rs4334758	0.93[ASN][1000 genomes]
rs4345191	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4443293	0.80[CEU][hapmap];0.95[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs4699323	0.83[ASW][hapmap];0.86[MEX][hapmap]
rs4699324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4699326	0.87[ASN][1000 genomes]
rs4699327	0.82[ASN][1000 genomes]
rs4699331	0.87[ASN][1000 genomes]
rs4699595	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4699596	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4699601	0.89[ASN][1000 genomes]
rs4699602	0.89[ASN][1000 genomes]
rs4699605	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58367603	0.89[ASN][1000 genomes]
rs59751489	0.97[ASN][1000 genomes]
rs60391193	0.98[ASN][1000 genomes]
rs60994860	0.87[ASN][1000 genomes]
rs62318502	0.98[ASN][1000 genomes]
rs62318503	0.98[ASN][1000 genomes]
rs62318504	0.97[ASN][1000 genomes]
rs62318940	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62321592	0.91[ASN][1000 genomes]
rs62321597	0.89[ASN][1000 genomes]
rs62321598	0.89[ASN][1000 genomes]
rs6532721	0.87[ASN][1000 genomes]
rs6532724	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs6532725	0.87[ASN][1000 genomes]
rs6814353	0.84[ASN][1000 genomes]
rs6815312	0.86[ASN][1000 genomes]
rs6817645	0.89[ASN][1000 genomes]
rs6818045	0.87[ASN][1000 genomes]
rs6823718	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs6827474	0.84[ASN][1000 genomes]
rs6827516	0.93[ASN][1000 genomes]
rs6828752	0.87[ASN][1000 genomes]
rs6829567	0.87[ASN][1000 genomes]
rs6831925	0.95[ASN][1000 genomes]
rs6839277	0.89[ASN][1000 genomes]
rs6839454	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs6840669	0.89[ASN][1000 genomes]
rs6848786	0.95[ASN][1000 genomes]
rs6853266	0.87[ASN][1000 genomes]
rs6853608	0.87[ASN][1000 genomes]
rs6854594	0.95[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs6854902	0.89[ASN][1000 genomes]
rs6854919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6855393	0.86[ASN][1000 genomes]
rs7377018	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7656233	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[ASN][1000 genomes]
rs7657179	0.95[ASN][1000 genomes]
rs7657644	0.87[ASN][1000 genomes]
rs7659006	0.98[ASN][1000 genomes]
rs7659593	0.98[ASN][1000 genomes]
rs7659801	0.96[ASN][1000 genomes]
rs7663438	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7663661	0.89[ASN][1000 genomes]
rs7663924	0.87[ASN][1000 genomes]
rs7664169	0.87[ASN][1000 genomes]
rs7664305	0.87[ASN][1000 genomes]
rs7664340	0.87[ASN][1000 genomes]
rs7666738	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7667796	0.87[ASN][1000 genomes]
rs7672127	0.96[ASN][1000 genomes]
rs7672720	0.97[ASN][1000 genomes]
rs7672901	0.97[ASN][1000 genomes]
rs7673880	0.87[ASN][1000 genomes]
rs7674095	0.86[ASN][1000 genomes]
rs7678557	0.87[ASN][1000 genomes]
rs7678564	0.87[ASN][1000 genomes]
rs7678567	0.87[ASN][1000 genomes]
rs7678911	0.87[ASN][1000 genomes]
rs7679299	0.85[ASN][1000 genomes]
rs7680909	0.98[ASN][1000 genomes]
rs7682991	0.92[ASN][1000 genomes]
rs7683737	0.87[ASN][1000 genomes]
rs7684521	0.87[ASN][1000 genomes]
rs7684646	0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs7687958	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7691433	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7691864	0.93[ASN][1000 genomes]
rs7696686	0.97[ASN][1000 genomes]
rs7696715	0.97[ASN][1000 genomes]
rs7697315	0.97[ASN][1000 genomes]
rs880470	0.97[ASN][1000 genomes]
rs880471	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs880473	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs921523	0.81[GIH][hapmap]
rs9992257	0.94[ASN][1000 genomes]
rs9992281	0.98[ASN][1000 genomes]
rs9992360	0.98[ASN][1000 genomes]
rs9992470	0.91[ASN][1000 genomes]
rs9994346	0.87[ASN][1000 genomes]
rs9994641	0.82[ASN][1000 genomes]
rs9998803	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9999200	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv868914	chr4:98416047-98969285	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1012612	chr4:98433491-98949873	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002098	chr4:98501337-99086320	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv537193	chr4:98501337-99086320	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv879648	chr4:98547717-99104879	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1000011	chr4:98562308-99101692	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1005567	chr4:98779722-99031934	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv995045	chr4:98802844-99022958	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv11264	chr4:98841655-99028842	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv830017	chr4:98866299-99047777	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv522741	chr4:98873667-99057457	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv528390	chr4:98873667-99065480	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11097592	MEMO1	cis	Frontal Cortex	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98927400-98927600	Weak transcription	Gastric	stomach

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