Variant report

Variant	rs11097614
Chromosome Location	chr4:99092175-99092176
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 231 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:220)

rs_ID	r²[population]
rs10000573	0.96[ASN][1000 genomes]
rs10004827	0.96[ASN][1000 genomes]
rs10005118	0.96[ASN][1000 genomes]
rs10005120	0.96[ASN][1000 genomes]
rs10007872	0.92[ASN][1000 genomes]
rs10009206	0.96[ASN][1000 genomes]
rs10012003	0.96[ASN][1000 genomes]
rs10012167	0.96[ASN][1000 genomes]
rs10012271	0.96[ASN][1000 genomes]
rs10017530	0.86[ASN][1000 genomes]
rs10018654	0.92[ASN][1000 genomes]
rs10021044	0.92[ASN][1000 genomes]
rs10025364	0.85[ASN][1000 genomes]
rs10029849	0.96[ASN][1000 genomes]
rs10031292	0.96[ASN][1000 genomes]
rs10033994	0.90[ASN][1000 genomes]
rs10034330	0.96[ASN][1000 genomes]
rs10034619	0.90[ASN][1000 genomes]
rs10049627	0.94[ASN][1000 genomes]
rs10050008	0.94[ASN][1000 genomes]
rs11097592	0.84[ASN][1000 genomes]
rs11097615	1.00[ASN][1000 genomes]
rs1111541	0.94[ASN][1000 genomes]
rs11721453	0.96[ASN][1000 genomes]
rs11726758	0.94[ASN][1000 genomes]
rs11727653	0.92[ASN][1000 genomes]
rs11729596	0.96[ASN][1000 genomes]
rs11729640	0.96[ASN][1000 genomes]
rs11735105	0.87[ASN][1000 genomes]
rs11932887	0.96[ASN][1000 genomes]
rs11932942	0.92[ASN][1000 genomes]
rs11941885	1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs11941961	0.96[ASN][1000 genomes]
rs11942114	0.96[ASN][1000 genomes]
rs11944855	0.96[ASN][1000 genomes]
rs13102369	0.96[ASN][1000 genomes]
rs13108422	0.96[ASN][1000 genomes]
rs13108535	0.96[ASN][1000 genomes]
rs13108868	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs13110418	0.93[ASN][1000 genomes]
rs13115356	0.85[ASN][1000 genomes]
rs13118892	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs13118945	0.81[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs13121558	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs13121766	0.85[ASN][1000 genomes]
rs13122456	0.85[ASN][1000 genomes]
rs13122897	0.85[ASN][1000 genomes]
rs13127542	0.88[ASN][1000 genomes]
rs13130923	0.96[ASN][1000 genomes]
rs13131962	0.96[ASN][1000 genomes]
rs13132395	0.93[ASN][1000 genomes]
rs13133619	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs13136721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13136930	0.87[ASN][1000 genomes]
rs13137152	0.87[ASN][1000 genomes]
rs13137808	0.94[ASN][1000 genomes]
rs13137859	0.96[ASN][1000 genomes]
rs13138051	0.96[ASN][1000 genomes]
rs13138059	0.96[ASN][1000 genomes]
rs13138063	0.96[ASN][1000 genomes]
rs13138438	0.96[ASN][1000 genomes]
rs13146909	0.85[ASN][1000 genomes]
rs13147921	1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs13149404	0.96[ASN][1000 genomes]
rs13149968	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs1349757	0.96[ASN][1000 genomes]
rs1426666	0.94[ASN][1000 genomes]
rs1527515	0.94[ASN][1000 genomes]
rs1527516	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs1534319	0.81[CEU][hapmap];0.95[CHB][hapmap]
rs17027308	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17484890	0.94[ASN][1000 genomes]
rs17484966	0.94[ASN][1000 genomes]
rs17486413	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs17549003	0.90[ASN][1000 genomes]
rs17550217	0.92[ASN][1000 genomes]
rs17550735	0.94[ASN][1000 genomes]
rs17558151	0.96[ASN][1000 genomes]
rs17558193	0.96[ASN][1000 genomes]
rs1834648	0.81[ASN][1000 genomes]
rs2114426	0.85[ASN][1000 genomes]
rs2167892	0.96[ASN][1000 genomes]
rs2839836	0.90[ASN][1000 genomes]
rs28415600	0.91[ASN][1000 genomes]
rs28485415	0.96[ASN][1000 genomes]
rs2865981	0.94[ASN][1000 genomes]
rs2865982	0.94[ASN][1000 genomes]
rs2865983	0.94[ASN][1000 genomes]
rs2865985	0.96[ASN][1000 genomes]
rs2865986	1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs2865987	0.96[ASN][1000 genomes]
rs2865988	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs2865989	0.96[ASN][1000 genomes]
rs2865990	0.83[CEU][hapmap];0.93[CHB][hapmap];0.96[ASN][1000 genomes]
rs2865991	0.96[ASN][1000 genomes]
rs2865993	0.96[ASN][1000 genomes]
rs28729647	0.96[ASN][1000 genomes]
rs28758886	0.96[ASN][1000 genomes]
rs28792413	1.00[ASN][1000 genomes]
rs2903152	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs2903154	0.96[ASN][1000 genomes]
rs34164616	0.94[ASN][1000 genomes]
rs34212748	0.96[ASN][1000 genomes]
rs34313689	0.94[ASN][1000 genomes]
rs34423396	0.96[ASN][1000 genomes]
rs34509663	0.92[ASN][1000 genomes]
rs34528953	0.85[ASN][1000 genomes]
rs34870112	0.96[ASN][1000 genomes]
rs34892904	0.87[ASN][1000 genomes]
rs35235971	0.92[ASN][1000 genomes]
rs35276471	0.96[ASN][1000 genomes]
rs35433756	0.96[ASN][1000 genomes]
rs35436270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35491210	0.92[ASN][1000 genomes]
rs35531558	0.87[ASN][1000 genomes]
rs35560671	0.96[ASN][1000 genomes]
rs35721906	0.85[ASN][1000 genomes]
rs35752787	0.85[ASN][1000 genomes]
rs35865860	0.90[ASN][1000 genomes]
rs35951881	0.92[ASN][1000 genomes]
rs36028444	0.90[ASN][1000 genomes]
rs3846443	0.94[ASN][1000 genomes]
rs3846444	0.94[ASN][1000 genomes]
rs3846445	0.94[ASN][1000 genomes]
rs3857216	0.94[ASN][1000 genomes]
rs3857217	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3896704	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs3911282	0.96[ASN][1000 genomes]
rs4334758	0.90[ASN][1000 genomes]
rs4345191	0.81[CEU][hapmap];0.95[CHB][hapmap]
rs4443293	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.95[ASN][1000 genomes]
rs4699324	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4699326	0.96[ASN][1000 genomes]
rs4699327	0.91[ASN][1000 genomes]
rs4699331	0.96[ASN][1000 genomes]
rs4699595	0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4699596	0.93[ASN][1000 genomes]
rs4699601	0.94[ASN][1000 genomes]
rs4699602	0.94[ASN][1000 genomes]
rs4699605	0.96[ASN][1000 genomes]
rs58367603	0.94[ASN][1000 genomes]
rs59751489	0.84[ASN][1000 genomes]
rs60028147	0.85[ASN][1000 genomes]
rs60391193	0.85[ASN][1000 genomes]
rs60994860	0.96[ASN][1000 genomes]
rs62318502	0.85[ASN][1000 genomes]
rs62318503	0.85[ASN][1000 genomes]
rs62318504	0.84[ASN][1000 genomes]
rs62318940	0.96[ASN][1000 genomes]
rs62321592	0.92[ASN][1000 genomes]
rs62321597	0.94[ASN][1000 genomes]
rs62321598	0.94[ASN][1000 genomes]
rs6532721	0.96[ASN][1000 genomes]
rs6532724	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs6532725	0.96[ASN][1000 genomes]
rs6814353	0.95[CEU][hapmap];0.99[ASN][1000 genomes]
rs6815312	0.94[ASN][1000 genomes]
rs6817645	0.94[ASN][1000 genomes]
rs6818045	0.96[ASN][1000 genomes]
rs6823718	0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs6827474	1.00[ASN][1000 genomes]
rs6827516	0.90[ASN][1000 genomes]
rs6828752	0.96[ASN][1000 genomes]
rs6829567	0.96[ASN][1000 genomes]
rs6831925	0.88[ASN][1000 genomes]
rs6839277	0.94[ASN][1000 genomes]
rs6839454	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs6840669	0.94[ASN][1000 genomes]
rs6848786	0.88[ASN][1000 genomes]
rs6853266	0.96[ASN][1000 genomes]
rs6853608	0.96[ASN][1000 genomes]
rs6854594	0.82[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.94[ASN][1000 genomes]
rs6854902	0.94[ASN][1000 genomes]
rs6854919	0.82[CEU][hapmap];0.95[CHB][hapmap];0.88[ASN][1000 genomes]
rs6855393	0.94[ASN][1000 genomes]
rs7377018	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7656233	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7657179	0.88[ASN][1000 genomes]
rs7657644	0.96[ASN][1000 genomes]
rs7659006	0.85[ASN][1000 genomes]
rs7659593	0.85[ASN][1000 genomes]
rs7659801	0.83[ASN][1000 genomes]
rs7663438	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7663661	0.94[ASN][1000 genomes]
rs7663924	0.96[ASN][1000 genomes]
rs7664169	0.96[ASN][1000 genomes]
rs7664305	0.95[ASN][1000 genomes]
rs7664340	0.96[ASN][1000 genomes]
rs7666738	0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs7667796	0.96[ASN][1000 genomes]
rs7672127	0.86[ASN][1000 genomes]
rs7672720	0.87[ASN][1000 genomes]
rs7672901	0.87[ASN][1000 genomes]
rs7673880	0.96[ASN][1000 genomes]
rs7674095	0.94[ASN][1000 genomes]
rs7678557	0.95[ASN][1000 genomes]
rs7678564	0.95[ASN][1000 genomes]
rs7678567	0.95[ASN][1000 genomes]
rs7678911	0.95[ASN][1000 genomes]
rs7679299	0.93[ASN][1000 genomes]
rs7680909	0.85[ASN][1000 genomes]
rs7682991	0.92[ASN][1000 genomes]
rs7683737	0.96[ASN][1000 genomes]
rs7684521	0.96[ASN][1000 genomes]
rs7684646	0.81[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.96[ASN][1000 genomes]
rs7687958	0.80[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs7691433	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[ASN][1000 genomes]
rs7691864	0.90[ASN][1000 genomes]
rs7696686	0.87[ASN][1000 genomes]
rs7696715	0.87[ASN][1000 genomes]
rs7697315	0.87[ASN][1000 genomes]
rs880470	0.84[ASN][1000 genomes]
rs880471	0.84[ASN][1000 genomes]
rs9992257	0.83[ASN][1000 genomes]
rs9992281	0.85[ASN][1000 genomes]
rs9992360	0.85[ASN][1000 genomes]
rs9994346	0.96[ASN][1000 genomes]
rs9994641	0.98[ASN][1000 genomes]
rs9998803	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs9999200	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv879648	chr4:98547717-99104879	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1000011	chr4:98562308-99101692	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv998270	chr4:99063275-99120404	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv461595	chr4:99065480-99172175	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv594939	chr4:99065480-99172175	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv470061	chr4:99078105-99160699	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99088200-99098200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:99091000-99092400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:99091400-99092400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:99091400-99092600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:99091600-99092400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:99091800-99092200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:99091800-99092200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:99091800-99092200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:99091800-99092200	Enhancers	Fetal Heart	heart
10	chr4:99091800-99092600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr4:99091800-99092600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr4:99091800-99092800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:99092000-99092400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:99092000-99092600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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