Variant report

Variant	rs4699605
Chromosome Location	chr4:99064379-99064380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99063959..99066263-chr4:99181971..99183968,2	K562	blood:
2	chr4:99062262..99068404-chr4:99178848..99183768,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138698	Chromatin interaction
ENSG00000214559	Chromatin interaction

Extended variants
information (count: 232 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs10000573	1.00[ASN][1000 genomes]
rs10004827	1.00[ASN][1000 genomes]
rs10005118	1.00[ASN][1000 genomes]
rs10005120	1.00[ASN][1000 genomes]
rs10007872	0.97[ASN][1000 genomes]
rs10009206	1.00[ASN][1000 genomes]
rs10012003	1.00[ASN][1000 genomes]
rs10012167	1.00[ASN][1000 genomes]
rs10012271	1.00[ASN][1000 genomes]
rs10017530	0.90[ASN][1000 genomes]
rs10018654	0.97[ASN][1000 genomes]
rs10021044	0.97[ASN][1000 genomes]
rs10025364	0.89[ASN][1000 genomes]
rs10025651	0.83[ASN][1000 genomes]
rs10029849	1.00[ASN][1000 genomes]
rs10031292	1.00[ASN][1000 genomes]
rs10033994	0.94[ASN][1000 genomes]
rs10034330	1.00[ASN][1000 genomes]
rs10034619	0.94[ASN][1000 genomes]
rs10049627	0.98[ASN][1000 genomes]
rs10050008	0.98[ASN][1000 genomes]
rs11097592	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11097614	0.96[ASN][1000 genomes]
rs11097615	0.96[ASN][1000 genomes]
rs1111541	0.98[ASN][1000 genomes]
rs11721453	1.00[ASN][1000 genomes]
rs11726758	0.98[ASN][1000 genomes]
rs11727653	0.97[ASN][1000 genomes]
rs11729596	1.00[ASN][1000 genomes]
rs11729640	1.00[ASN][1000 genomes]
rs11735105	0.91[ASN][1000 genomes]
rs11932887	1.00[ASN][1000 genomes]
rs11932942	0.97[ASN][1000 genomes]
rs11941885	1.00[ASN][1000 genomes]
rs11941961	1.00[ASN][1000 genomes]
rs11942114	1.00[ASN][1000 genomes]
rs11944855	1.00[ASN][1000 genomes]
rs13102369	1.00[ASN][1000 genomes]
rs13108422	1.00[ASN][1000 genomes]
rs13108535	1.00[ASN][1000 genomes]
rs13110418	0.97[ASN][1000 genomes]
rs13115356	0.89[ASN][1000 genomes]
rs13118892	0.94[ASN][1000 genomes]
rs13118945	0.94[ASN][1000 genomes]
rs13121558	0.97[ASN][1000 genomes]
rs13121766	0.89[ASN][1000 genomes]
rs13122456	0.89[ASN][1000 genomes]
rs13122897	0.89[ASN][1000 genomes]
rs13127542	0.92[ASN][1000 genomes]
rs13130923	1.00[ASN][1000 genomes]
rs13131962	1.00[ASN][1000 genomes]
rs13132395	0.97[ASN][1000 genomes]
rs13133619	1.00[ASN][1000 genomes]
rs13136721	0.96[ASN][1000 genomes]
rs13136930	0.91[ASN][1000 genomes]
rs13137152	0.91[ASN][1000 genomes]
rs13137808	0.98[ASN][1000 genomes]
rs13137859	1.00[ASN][1000 genomes]
rs13138051	1.00[ASN][1000 genomes]
rs13138059	1.00[ASN][1000 genomes]
rs13138063	1.00[ASN][1000 genomes]
rs13138438	1.00[ASN][1000 genomes]
rs13146909	0.89[ASN][1000 genomes]
rs13147921	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149404	1.00[ASN][1000 genomes]
rs13149968	1.00[ASN][1000 genomes]
rs1349757	1.00[ASN][1000 genomes]
rs1426666	0.98[ASN][1000 genomes]
rs1527515	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1527516	0.94[ASN][1000 genomes]
rs17027308	0.96[ASN][1000 genomes]
rs17484890	0.98[ASN][1000 genomes]
rs17484966	0.98[ASN][1000 genomes]
rs17486413	1.00[ASN][1000 genomes]
rs17549003	0.94[ASN][1000 genomes]
rs17550217	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17550735	0.98[ASN][1000 genomes]
rs17558151	1.00[ASN][1000 genomes]
rs17558193	1.00[ASN][1000 genomes]
rs1834648	0.85[ASN][1000 genomes]
rs2114426	0.89[ASN][1000 genomes]
rs2167892	1.00[ASN][1000 genomes]
rs2839836	0.94[ASN][1000 genomes]
rs28415600	0.95[ASN][1000 genomes]
rs28485415	1.00[ASN][1000 genomes]
rs2865981	0.98[ASN][1000 genomes]
rs2865982	0.98[ASN][1000 genomes]
rs2865983	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2865985	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865986	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865987	1.00[ASN][1000 genomes]
rs2865988	1.00[ASN][1000 genomes]
rs2865989	1.00[ASN][1000 genomes]
rs2865990	1.00[ASN][1000 genomes]
rs2865991	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2865993	1.00[ASN][1000 genomes]
rs28729647	1.00[ASN][1000 genomes]
rs28758886	1.00[ASN][1000 genomes]
rs28791018	0.83[ASN][1000 genomes]
rs28792413	0.96[ASN][1000 genomes]
rs2903152	1.00[ASN][1000 genomes]
rs2903154	1.00[ASN][1000 genomes]
rs34164616	0.98[ASN][1000 genomes]
rs34212748	1.00[ASN][1000 genomes]
rs34313689	0.98[ASN][1000 genomes]
rs34423396	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34509663	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34528953	0.89[ASN][1000 genomes]
rs34870112	1.00[ASN][1000 genomes]
rs34892904	0.91[ASN][1000 genomes]
rs35235971	0.97[ASN][1000 genomes]
rs35276471	1.00[ASN][1000 genomes]
rs35433756	1.00[ASN][1000 genomes]
rs35436270	0.96[ASN][1000 genomes]
rs35491210	0.97[ASN][1000 genomes]
rs35531558	0.91[ASN][1000 genomes]
rs35560671	1.00[ASN][1000 genomes]
rs35721906	0.89[ASN][1000 genomes]
rs35752787	0.89[ASN][1000 genomes]
rs35865860	0.94[ASN][1000 genomes]
rs35951881	0.97[ASN][1000 genomes]
rs36028444	0.94[ASN][1000 genomes]
rs3846443	0.98[ASN][1000 genomes]
rs3846444	0.98[ASN][1000 genomes]
rs3846445	0.98[ASN][1000 genomes]
rs3857216	0.98[ASN][1000 genomes]
rs3857217	0.98[ASN][1000 genomes]
rs3896704	0.98[ASN][1000 genomes]
rs3911282	1.00[ASN][1000 genomes]
rs4334758	0.94[ASN][1000 genomes]
rs4443293	0.99[ASN][1000 genomes]
rs4699324	0.94[ASN][1000 genomes]
rs4699326	1.00[ASN][1000 genomes]
rs4699327	0.95[ASN][1000 genomes]
rs4699331	1.00[ASN][1000 genomes]
rs4699595	0.97[ASN][1000 genomes]
rs4699596	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699601	0.98[ASN][1000 genomes]
rs4699602	0.98[ASN][1000 genomes]
rs58367603	0.98[ASN][1000 genomes]
rs59751489	0.87[ASN][1000 genomes]
rs60028147	0.88[ASN][1000 genomes]
rs60391193	0.89[ASN][1000 genomes]
rs60994860	1.00[ASN][1000 genomes]
rs62318502	0.89[ASN][1000 genomes]
rs62318503	0.89[ASN][1000 genomes]
rs62318504	0.88[ASN][1000 genomes]
rs62318940	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62321592	0.97[ASN][1000 genomes]
rs62321597	0.98[ASN][1000 genomes]
rs62321598	0.98[ASN][1000 genomes]
rs6532721	1.00[ASN][1000 genomes]
rs6532724	1.00[ASN][1000 genomes]
rs6532725	1.00[ASN][1000 genomes]
rs6814353	0.97[ASN][1000 genomes]
rs6815312	0.98[ASN][1000 genomes]
rs6817645	0.98[ASN][1000 genomes]
rs6818045	1.00[ASN][1000 genomes]
rs6823718	1.00[ASN][1000 genomes]
rs6827474	0.96[ASN][1000 genomes]
rs6827516	0.94[ASN][1000 genomes]
rs6828752	1.00[ASN][1000 genomes]
rs6829567	1.00[ASN][1000 genomes]
rs6831925	0.92[ASN][1000 genomes]
rs6839277	0.98[ASN][1000 genomes]
rs6839454	0.97[ASN][1000 genomes]
rs6840669	0.98[ASN][1000 genomes]
rs6848786	0.92[ASN][1000 genomes]
rs6853266	1.00[ASN][1000 genomes]
rs6853608	1.00[ASN][1000 genomes]
rs6854594	0.98[ASN][1000 genomes]
rs6854902	0.98[ASN][1000 genomes]
rs6854919	0.92[ASN][1000 genomes]
rs6855393	0.98[ASN][1000 genomes]
rs7377018	0.98[ASN][1000 genomes]
rs7656233	0.96[ASN][1000 genomes]
rs7657179	0.92[ASN][1000 genomes]
rs7657644	1.00[ASN][1000 genomes]
rs7659006	0.89[ASN][1000 genomes]
rs7659593	0.89[ASN][1000 genomes]
rs7659801	0.87[ASN][1000 genomes]
rs7663438	0.98[ASN][1000 genomes]
rs7663661	0.98[ASN][1000 genomes]
rs7663924	1.00[ASN][1000 genomes]
rs7664169	1.00[ASN][1000 genomes]
rs7664305	0.99[ASN][1000 genomes]
rs7664340	1.00[ASN][1000 genomes]
rs7666738	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7667796	1.00[ASN][1000 genomes]
rs7672127	0.90[ASN][1000 genomes]
rs7672720	0.91[ASN][1000 genomes]
rs7672901	0.91[ASN][1000 genomes]
rs7673880	1.00[ASN][1000 genomes]
rs7674095	0.98[ASN][1000 genomes]
rs7678557	0.99[ASN][1000 genomes]
rs7678564	0.99[ASN][1000 genomes]
rs7678567	0.99[ASN][1000 genomes]
rs7678911	0.99[ASN][1000 genomes]
rs7679299	0.97[ASN][1000 genomes]
rs7680909	0.89[ASN][1000 genomes]
rs7682991	0.96[ASN][1000 genomes]
rs7683737	1.00[ASN][1000 genomes]
rs7684521	1.00[ASN][1000 genomes]
rs7684646	1.00[ASN][1000 genomes]
rs7687958	0.98[ASN][1000 genomes]
rs7691433	0.94[ASN][1000 genomes]
rs7691864	0.94[ASN][1000 genomes]
rs7696686	0.91[ASN][1000 genomes]
rs7696715	0.91[ASN][1000 genomes]
rs7697315	0.91[ASN][1000 genomes]
rs880470	0.87[ASN][1000 genomes]
rs880471	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs880473	0.84[EUR][1000 genomes]
rs9992257	0.87[ASN][1000 genomes]
rs9992281	0.89[ASN][1000 genomes]
rs9992360	0.89[ASN][1000 genomes]
rs9992470	0.82[ASN][1000 genomes]
rs9994346	1.00[ASN][1000 genomes]
rs9994641	0.94[ASN][1000 genomes]
rs9998803	0.97[ASN][1000 genomes]
rs9999200	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1002098	chr4:98501337-99086320	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537193	chr4:98501337-99086320	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv879648	chr4:98547717-99104879	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1000011	chr4:98562308-99101692	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv528390	chr4:98873667-99065480	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv998270	chr4:99063275-99120404	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99063400-99064800	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:99063400-99065200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:99063400-99065600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr4:99063600-99064800	Active TSS	GM12878-XiMat	blood
5	chr4:99063600-99064800	Active TSS	HMEC	breast
6	chr4:99063600-99065200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr4:99063600-99065200	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr4:99063600-99065200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr4:99063600-99065200	Active TSS	Brain Germinal Matrix	brain
10	chr4:99063800-99064400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr4:99063800-99064400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr4:99063800-99064400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr4:99063800-99064400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:99063800-99064400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr4:99063800-99064400	Flanking Active TSS	Fetal Thymus	thymus
16	chr4:99063800-99064400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr4:99063800-99064400	Flanking Active TSS	NH-A	brain
18	chr4:99063800-99064600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:99063800-99064800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:99063800-99064800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:99063800-99064800	Active TSS	Thymus	Thymus
22	chr4:99063800-99065000	Active TSS	H1 Cell Line	embryonic stem cell
23	chr4:99063800-99065000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:99063800-99065000	Active TSS	H9 Cell Line	embryonic stem cell
25	chr4:99063800-99065000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:99063800-99065000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:99063800-99065000	Active TSS	Esophagus	oesophagus
28	chr4:99063800-99065000	Active TSS	Fetal Intestine Large	intestine
29	chr4:99063800-99065000	Active TSS	Placenta Amnion	Placenta Amnion
30	chr4:99063800-99065000	Active TSS	Psoas Muscle	Psoas
31	chr4:99063800-99065000	Active TSS	Stomach Mucosa	stomach
32	chr4:99063800-99065000	Active TSS	A549	lung
33	chr4:99063800-99065200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:99063800-99065200	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr4:99063800-99065200	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr4:99063800-99065200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:99063800-99065200	Active TSS	Brain Hippocampus Middle	brain
38	chr4:99063800-99065200	Active TSS	Brain Inferior Temporal Lobe	brain
39	chr4:99063800-99065200	Active TSS	Brain Substantia Nigra	brain
40	chr4:99063800-99065200	Active TSS	Colonic Mucosa	Colon
41	chr4:99063800-99065200	Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr4:99063800-99065200	Active TSS	Fetal Kidney	kidney
43	chr4:99063800-99065200	Active TSS	Fetal Stomach	stomach
44	chr4:99063800-99065200	Active TSS	Pancreas	Pancrea
45	chr4:99063800-99065200	Active TSS	Rectal Smooth Muscle	rectum
46	chr4:99063800-99065200	Active TSS	Stomach Smooth Muscle	stomach
47	chr4:99063800-99065400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:99063800-99065400	Active TSS	Right Atrium	heart
49	chr4:99063800-99065600	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr4:99063800-99065600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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