Variant report

Variant	rs11098886
Chromosome Location	chr4:127489824-127489825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10518497	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12651617	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1511138	0.87[ASN][1000 genomes]
rs1511139	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1511141	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1511142	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17011254	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58806415	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59803623	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60596580	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60752116	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6829686	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6845121	0.97[ASN][1000 genomes]
rs7695327	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127474800-127493400	Weak transcription	K562	blood
2	chr4:127485800-127490000	Weak transcription	Brain Substantia Nigra	brain
3	chr4:127489600-127491400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:127489800-127490800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:127489800-127490800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:127489800-127490800	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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