Variant report
| Variant | rs1511142 |
|---|---|
| Chromosome Location | chr4:127495509-127495510 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:127489751..127491692-chr4:127495242..127497629,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs10518497 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11098886 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12651617 | 0.82[AMR][1000 genomes] |
| rs1511138 | 0.87[ASN][1000 genomes] |
| rs1511139 | 1.00[ASN][1000 genomes] |
| rs1511141 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17011254 | 0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs58806415 | 0.82[AMR][1000 genomes] |
| rs59803623 | 0.82[AMR][1000 genomes] |
| rs60596580 | 0.82[AMR][1000 genomes] |
| rs60752116 | 0.82[AMR][1000 genomes] |
| rs6829686 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6845121 | 0.97[ASN][1000 genomes] |
| rs7695327 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012833 | chr4:127468474-127760933 | Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv537242 | chr4:127468474-127760933 | Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv524850 | chr4:127470903-127768849 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:127493800-127502200 | Weak transcription | K562 | blood |
