Variant report

Variant	rs11099666
Chromosome Location	chr4:148633428-148633429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10776520	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs11725260	0.80[ASN][1000 genomes]
rs11726957	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12502667	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.93[JPT][hapmap];0.87[TSI][hapmap]
rs12646582	0.90[AFR][1000 genomes]
rs13109759	0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13119467	0.91[TSI][hapmap]
rs13128620	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs36052332	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4835093	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs4835446	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56224422	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6535556	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs6828600	0.82[CEU][hapmap]
rs6836509	0.82[CEU][hapmap]
rs7661297	0.82[CEU][hapmap];0.82[CHD][hapmap];0.91[TSI][hapmap]
rs7666807	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs905606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148627000-148634200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:148629400-148634600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:148629800-148633800	Weak transcription	Adipose Nuclei	Adipose
4	chr4:148629800-148634400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:148629800-148635000	Weak transcription	NHDF-Ad	bronchial
6	chr4:148629800-148635000	Weak transcription	NHLF	lung
7	chr4:148629800-148635600	Weak transcription	Osteobl	bone
8	chr4:148630000-148634600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:148630200-148635400	Weak transcription	HMEC	breast
10	chr4:148630800-148636200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:148631400-148635200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:148631400-148635200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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