Variant report

Variant	rs11100610
Chromosome Location	chr4:166307262-166307263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166298064..166301679-chr4:166306197..166309667,4	MCF-7	breast:
2	chr4:166298593..166300612-chr4:166306180..166307966,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10022413	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11724810	0.82[ASN][1000 genomes]
rs13110854	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1438109	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs28372351	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28604413	0.82[ASN][1000 genomes]
rs35355030	0.81[ASN][1000 genomes]
rs9308104	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9631752	0.83[ASN][1000 genomes]
rs9631753	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9631765	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9997245	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9997470	0.82[ASN][1000 genomes]
rs9997481	0.82[ASN][1000 genomes]
rs9999764	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11100610	CPE	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
2	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:166303200-166307400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:166304000-166311000	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
6	chr4:166305200-166314800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:166305400-166309000	Weak transcription	Aorta	Aorta
9	chr4:166305600-166314200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:166306400-166307600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:166306400-166309600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr4:166306400-166314200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:166306600-166307600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:166306600-166307600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr4:166306600-166308200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
18	chr4:166306800-166307600	Weak transcription	NHDF-Ad	bronchial
19	chr4:166306800-166308200	Weak transcription	Fetal Brain Male	brain
20	chr4:166306800-166309000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:166307000-166307400	Weak transcription	Fetal Brain Female	brain
22	chr4:166307000-166314600	Weak transcription	Fetal Lung	lung
23	chr4:166307200-166322200	Weak transcription	HepG2	liver

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