Variant report

Variant	rs13110854
Chromosome Location	chr4:166308737-166308738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166298064..166301679-chr4:166306197..166309667,4	MCF-7	breast:
2	chr4:166304221..166306699-chr4:166307750..166310906,4	MCF-7	breast:
3	chr4:166300805..166303563-chr4:166307690..166309823,2	K562	blood:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10022413	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11100610	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11724810	0.86[ASN][1000 genomes]
rs1438109	0.85[ASN][1000 genomes]
rs28372351	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28604413	0.85[ASN][1000 genomes]
rs28729471	0.82[ASN][1000 genomes]
rs34405858	0.81[ASN][1000 genomes]
rs35212926	0.81[ASN][1000 genomes]
rs35355030	0.85[ASN][1000 genomes]
rs72701678	0.81[ASN][1000 genomes]
rs9308104	0.85[ASN][1000 genomes]
rs9631752	0.85[ASN][1000 genomes]
rs9631753	0.85[ASN][1000 genomes]
rs9631765	0.85[ASN][1000 genomes]
rs9997245	0.92[ASN][1000 genomes]
rs9997470	0.85[ASN][1000 genomes]
rs9997481	0.85[ASN][1000 genomes]
rs9999764	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
2	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:166304000-166311000	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
5	chr4:166305200-166314800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:166305400-166309000	Weak transcription	Aorta	Aorta
8	chr4:166305600-166314200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:166306400-166309600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:166306400-166314200	Weak transcription	Brain Anterior Caudate	brain
12	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
13	chr4:166306800-166309000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:166307000-166314600	Weak transcription	Fetal Lung	lung
15	chr4:166307200-166322200	Weak transcription	HepG2	liver
16	chr4:166308200-166309400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:166308400-166309000	Weak transcription	Fetal Brain Male	brain
18	chr4:166308400-166310000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:166308400-166312600	Weak transcription	Fetal Brain Female	brain
20	chr4:166308600-166309000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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