Variant report

Variant	rs10022413
Chromosome Location	chr4:166301778-166301779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:166248749..166251544-chr4:166300636..166302638,2	MCF-7	breast:
2	chr4:166301322..166303532-chr4:166346590..166348237,2	MCF-7	breast:
3	chr4:166300805..166303563-chr4:166307690..166309823,2	K562	blood:
4	chr4:166265012..166266616-chr4:166301468..166303091,2	K562	blood:
5	chr4:166300182..166301937-chr4:166338452..166341339,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11100610	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13110854	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1438109	0.85[JPT][hapmap]
rs28372351	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34405858	0.80[ASN][1000 genomes]
rs35212926	0.81[ASN][1000 genomes]
rs72701678	0.80[ASN][1000 genomes]
rs9308104	0.85[JPT][hapmap]
rs9631753	0.85[JPT][hapmap]
rs9631765	0.85[JPT][hapmap]
rs9997245	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9999764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10022413	CPE	cis	cerebellum	SCAN

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166298000-166302400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:166299200-166303200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:166299400-166302200	Active TSS	Aorta	Aorta
4	chr4:166299400-166304000	Active TSS	Brain Hippocampus Middle	brain
5	chr4:166299600-166301800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr4:166299600-166304400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr4:166299800-166302200	Active TSS	Brain Substantia Nigra	brain
8	chr4:166299800-166303000	Active TSS	Fetal Brain Female	brain
9	chr4:166299800-166303200	Active TSS	Brain Anterior Caudate	brain
10	chr4:166300000-166301800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:166300000-166301800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:166300000-166302600	Active TSS	Brain Angular Gyrus	brain
13	chr4:166300000-166304000	Active TSS	Brain Cingulate Gyrus	brain
14	chr4:166300200-166301800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:166300200-166303000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr4:166300800-166305000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:166300800-166305000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:166300800-166305000	Weak transcription	HMEC	breast
19	chr4:166301000-166303000	Active TSS	Fetal Brain Male	brain
20	chr4:166301000-166305000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:166301200-166301800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:166301200-166305400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:166301200-166305400	Weak transcription	Esophagus	oesophagus
24	chr4:166301400-166301800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
25	chr4:166301400-166301800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:166301400-166301800	Active TSS	Brain Germinal Matrix	brain
27	chr4:166301400-166302000	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr4:166301400-166302000	Active TSS	Fetal Stomach	stomach
29	chr4:166301400-166302200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
30	chr4:166301400-166302200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:166301400-166302400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr4:166301400-166302800	Weak transcription	Pancreas	Pancrea
33	chr4:166301400-166303000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:166301400-166303000	Active TSS	HepG2	liver
35	chr4:166301400-166305000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:166301400-166305400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:166301400-166305400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:166301400-166305600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
40	chr4:166301600-166301800	Enhancers	Fetal Intestine Large	intestine
41	chr4:166301600-166302200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:166301600-166303800	Weak transcription	Fetal Lung	lung
43	chr4:166301600-166305000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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