Variant report

Variant	rs72701678
Chromosome Location	chr4:166317587-166317588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166316542..166318609-chr4:166322064..166324233,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10022413	0.80[ASN][1000 genomes]
rs11724810	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13110854	0.81[ASN][1000 genomes]
rs1438109	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17686863	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17686882	0.80[AMR][1000 genomes]
rs28372351	0.81[ASN][1000 genomes]
rs28503877	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28604413	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28729471	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34405858	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212926	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35355030	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4691190	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4691191	0.81[ASN][1000 genomes]
rs9308104	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9631752	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9631753	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9631765	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997245	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9997470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9997481	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9999764	0.81[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
5	chr4:166307200-166322200	Weak transcription	HepG2	liver
6	chr4:166311400-166319600	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:166312200-166318800	Weak transcription	Fetal Brain Male	brain
9	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
10	chr4:166315400-166318600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:166315400-166319600	Weak transcription	Brain Substantia Nigra	brain
12	chr4:166315800-166328000	Weak transcription	Ovary	ovary
13	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr4:166317000-166317600	Enhancers	Fetal Lung	lung
15	chr4:166317200-166319400	Weak transcription	Fetal Brain Female	brain
16	chr4:166317400-166317600	Enhancers	Brain Anterior Caudate	brain
17	chr4:166317400-166318200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links