Variant report

Variant	rs28503877
Chromosome Location	chr4:166319470-166319471
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166314486..166316368-chr4:166318044..166320457,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11724810	0.84[AMR][1000 genomes]
rs11732933	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1438109	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17686863	0.81[EUR][1000 genomes]
rs17686882	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28604413	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28729471	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34405858	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35212926	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35355030	0.84[AMR][1000 genomes]
rs4691190	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66746153	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72701678	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs729699	0.81[AMR][1000 genomes]
rs9308104	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9631752	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9631753	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9631765	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9997245	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9997470	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9997481	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
4	chr4:166307200-166322200	Weak transcription	HepG2	liver
5	chr4:166311400-166319600	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
8	chr4:166315400-166319600	Weak transcription	Brain Substantia Nigra	brain
9	chr4:166315800-166328000	Weak transcription	Ovary	ovary
10	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:166317600-166322800	Weak transcription	Brain Anterior Caudate	brain
12	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:166318600-166323600	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr4:166318800-166321800	Enhancers	Fetal Brain Male	brain
15	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:166319400-166319600	Enhancers	Fetal Brain Female	brain
17	chr4:166319400-166320200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:166319400-166320200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr4:166319400-166320600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:166319400-166322600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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