Variant report

Variant	rs11732933
Chromosome Location	chr4:166324481-166324482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166298755..166301718-chr4:166324143..166325651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109472	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10008344	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10011067	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10011401	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10011416	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10014827	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10027722	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10029982	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10030374	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10517843	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10517844	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10517845	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11731822	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11732478	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11732583	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11732618	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11736871	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13103782	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13111798	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13125832	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13126038	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13126229	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13134608	0.82[EUR][1000 genomes]
rs13149691	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13149935	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17624977	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17686882	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1866221	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866222	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866223	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1866224	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1866225	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28409044	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28503877	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28547315	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28573326	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2874700	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4266249	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4293756	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4299540	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4349560	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4408916	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66746153	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67650739	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6828394	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72703616	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs729699	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73005556	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9308105	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9308106	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9992011	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9993860	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9996980	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
4	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
6	chr4:166315800-166328000	Weak transcription	Ovary	ovary
7	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
13	chr4:166320200-166325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:166320200-166325600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:166322800-166327000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:166323000-166325600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:166323200-166326000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:166323400-166325800	Enhancers	Fetal Brain Male	brain
20	chr4:166323400-166326200	Strong transcription	HepG2	liver
21	chr4:166323600-166325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:166323600-166330000	Weak transcription	Brain Anterior Caudate	brain
23	chr4:166323800-166325200	Enhancers	Fetal Brain Female	brain
24	chr4:166323800-166325400	Weak transcription	Brain Germinal Matrix	brain
25	chr4:166323800-166325600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:166324400-166326800	Weak transcription	Fetal Intestine Small	intestine

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