Variant report

Variant	rs28409044
Chromosome Location	chr4:166337461-166337462
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr4:166337117-166337581	ECC-1	luminal epithelium:	n/a	n/a
2	TCF12	chr4:166337005-166337562	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr4:166337070-166337518	ECC-1	luminal epithelium:	n/a	n/a
4	NFIC	chr4:166337128-166337563	ECC-1	luminal epithelium:	n/a	n/a
5	MAX	chr4:166337071-166337692	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr4:166336892-166337655	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
CPE	TF binding region

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs10004552	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10008344	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10011067	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10011232	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10011401	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10011416	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10014827	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10025621	0.81[EUR][1000 genomes]
rs10027722	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10029982	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10030374	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10033089	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10471062	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10517843	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10517844	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10517845	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10517846	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11724032	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11724900	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11724918	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11724925	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11728234	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11728267	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11728337	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11729298	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11731695	0.81[EUR][1000 genomes]
rs11731727	0.81[EUR][1000 genomes]
rs11731822	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732063	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11732161	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11732478	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732583	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732618	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732933	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11733216	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11735569	0.81[EUR][1000 genomes]
rs11735607	0.81[EUR][1000 genomes]
rs11736871	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11737162	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13102522	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13102614	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13102659	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13103210	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13103665	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13103782	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13107292	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13110546	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13110900	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13111119	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13111122	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13111798	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125242	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13125832	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13126038	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13126229	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13130511	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13131303	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13131514	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13131657	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13131741	0.80[EUR][1000 genomes]
rs13132068	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13134608	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13138024	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13141616	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13147113	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13149691	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13149935	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13151923	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17046419	0.81[EUR][1000 genomes]
rs17046421	0.81[EUR][1000 genomes]
rs17046423	0.81[EUR][1000 genomes]
rs17046430	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17046432	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17046436	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17046441	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17046447	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17046449	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17046452	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17440198	0.81[EUR][1000 genomes]
rs17624977	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17686882	0.81[ASN][1000 genomes]
rs17687178	0.82[EUR][1000 genomes]
rs1866221	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866222	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866223	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1866224	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1866225	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946816	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1946817	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1946818	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2033767	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28412249	0.81[EUR][1000 genomes]
rs28429925	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28450545	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28490347	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28510895	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28516800	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28547315	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28573326	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28635186	0.82[EUR][1000 genomes]
rs28638079	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28655558	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28660703	0.81[EUR][1000 genomes]
rs2874700	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28888680	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34313639	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34324337	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34771634	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34843230	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35173790	0.81[EUR][1000 genomes]
rs35186204	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35200071	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35352686	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35593296	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3943704	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4266249	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293756	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4299540	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349560	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379020	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4408916	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830608	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56189732	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56238507	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58507021	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59611751	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59831445	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61229216	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs66672542	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66799250	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67371851	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67442618	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67474738	0.80[EUR][1000 genomes]
rs67527862	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67650739	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67683477	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67815427	0.80[EUR][1000 genomes]
rs67848784	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67904921	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67911830	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs68185452	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6828394	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6832392	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6832627	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6833220	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72703616	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72703629	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72703630	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72703647	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72703648	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72703650	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs729699	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73005556	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73860742	0.84[AMR][1000 genomes]
rs9308105	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9308106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9308107	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9308108	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9759580	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9762244	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9992011	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9993860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9996980	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9999463	0.81[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
4	chr4:166326000-166339000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:166326400-166338800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:166326800-166364400	Weak transcription	Brain Germinal Matrix	brain
7	chr4:166327400-166339200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:166332800-166339200	Weak transcription	Brain Angular Gyrus	brain
9	chr4:166333800-166337600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:166334800-166342600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:166334800-166348000	Weak transcription	Pancreas	Pancrea
12	chr4:166335000-166342400	Weak transcription	HepG2	liver
13	chr4:166336400-166338000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:166336400-166339600	Weak transcription	Fetal Brain Female	brain
15	chr4:166337000-166337800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:166337000-166337800	Weak transcription	Brain Anterior Caudate	brain
17	chr4:166337200-166337600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:166337200-166337800	Active TSS	Spleen	Spleen
19	chr4:166337200-166340000	Enhancers	Fetal Brain Male	brain
20	chr4:166337400-166339000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr4:166337400-166348200	Weak transcription	Aorta	Aorta

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