Variant report

Variant	rs17686882
Chromosome Location	chr4:166322398-166322399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166316542..166318609-chr4:166322064..166324233,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10008344	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10011067	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10011401	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10011416	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10014827	0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10030374	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10517843	0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10517844	0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10517845	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs11731822	0.82[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11732478	0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11732583	0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11732618	0.81[ASN][1000 genomes]
rs11732933	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11736871	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs13103782	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13111798	0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13125832	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13126038	0.81[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13126229	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13149691	0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13149935	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1438109	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs17624977	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866221	0.83[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866222	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866223	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866224	0.83[JPT][hapmap];0.84[AMR][1000 genomes]
rs1866225	0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28409044	0.81[ASN][1000 genomes]
rs28503877	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28604413	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2874700	0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs34405858	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35212926	0.81[AMR][1000 genomes]
rs4266249	0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4293756	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4299540	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4349560	0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4408916	0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4691190	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66746153	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67650739	0.81[ASN][1000 genomes]
rs72701678	0.80[AMR][1000 genomes]
rs72703616	0.88[AMR][1000 genomes]
rs729699	0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73005556	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9308104	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs9631752	0.81[AMR][1000 genomes]
rs9631753	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs9631765	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs9992011	0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9997245	0.86[CEU][hapmap];0.81[AMR][1000 genomes]
rs9997470	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9997481	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
2	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
4	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:166315000-166325200	Weak transcription	Aorta	Aorta
6	chr4:166315800-166328000	Weak transcription	Ovary	ovary
7	chr4:166315800-166332600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:166317600-166322800	Weak transcription	Brain Anterior Caudate	brain
9	chr4:166318200-166330600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:166318600-166323600	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr4:166319200-166332000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:166319400-166322600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:166319600-166361800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:166320000-166339000	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:166320000-166339200	Weak transcription	Brain Substantia Nigra	brain
16	chr4:166320200-166325200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:166320200-166325600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:166320200-166332600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:166321800-166323400	Weak transcription	Fetal Brain Male	brain
20	chr4:166322000-166322600	Weak transcription	Fetal Brain Female	brain
21	chr4:166322200-166322800	Strong transcription	HepG2	liver

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