Variant report

Variant	rs35212926
Chromosome Location	chr4:166313005-166313006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10022413	0.81[ASN][1000 genomes]
rs11724810	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13110854	0.81[ASN][1000 genomes]
rs1438109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17686863	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17686882	0.81[AMR][1000 genomes]
rs28372351	0.82[ASN][1000 genomes]
rs28503877	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28604413	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28729471	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34405858	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35355030	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4691190	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4691191	0.82[ASN][1000 genomes]
rs72701678	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9308104	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9631752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9631753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9631765	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9997245	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9997470	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9997481	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9999764	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446437	chr4:166312527-166315050	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166301400-166314800	Weak transcription	Fetal Kidney	kidney
2	chr4:166302200-166314600	Weak transcription	Brain Substantia Nigra	brain
3	chr4:166304400-166332400	Weak transcription	Brain Angular Gyrus	brain
4	chr4:166305200-166314800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:166305200-166319400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:166305600-166314200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:166305800-166330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:166306400-166314200	Weak transcription	Brain Anterior Caudate	brain
9	chr4:166306600-166324800	Weak transcription	Fetal Stomach	stomach
10	chr4:166307000-166314600	Weak transcription	Fetal Lung	lung
11	chr4:166307200-166322200	Weak transcription	HepG2	liver
12	chr4:166309400-166314600	Weak transcription	Aorta	Aorta
13	chr4:166310600-166314800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:166311400-166319600	Weak transcription	Brain Hippocampus Middle	brain
15	chr4:166311400-166327400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:166312200-166318800	Weak transcription	Fetal Brain Male	brain
17	chr4:166312600-166313200	Enhancers	Fetal Brain Female	brain
18	chr4:166312600-166313200	Enhancers	Pancreatic Islets	Pancreatic Islet

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