Variant report
| Variant | rs11101012 |
|---|---|
| Chromosome Location | chr10:50411355-50411356 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000204161 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10857444 | 1.00[AMR][1000 genomes] |
| rs10857451 | 1.00[AMR][1000 genomes] |
| rs11101011 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11101013 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11101020 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11101030 | 1.00[AMR][1000 genomes] |
| rs11101031 | 1.00[AMR][1000 genomes] |
| rs11101034 | 1.00[AMR][1000 genomes] |
| rs11101044 | 1.00[AMR][1000 genomes] |
| rs11101051 | 1.00[AMR][1000 genomes] |
| rs11101054 | 1.00[AMR][1000 genomes] |
| rs12354761 | 1.00[AMR][1000 genomes] |
| rs12355572 | 1.00[AMR][1000 genomes] |
| rs41280543 | 1.00[AMR][1000 genomes] |
| rs41281945 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895375 | chr10:50306386-51028871 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 2 | nsv534410 | chr10:50317458-50826916 | Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
