Variant report

Variant	rs41281945
Chromosome Location	chr10:50369792-50369793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49865954..49866714-chr10:50369332..50370327,2	MCF-7	breast:
2	chr10:50189004..50189946-chr10:50369694..50370301,2	MCF-7	breast:
3	chr10:50349435..50351722-chr10:50368271..50370648,2	K562	blood:
4	chr10:50210429..50211061-chr10:50369700..50370308,2	MCF-7	breast:
5	chr10:50350582..50352155-chr10:50369514..50372257,2	K562	blood:
6	chr10:50092244..50093034-chr10:50369173..50370169,2	MCF-7	breast:
7	chr10:50208979..50209840-chr10:50369197..50369909,3	MCF-7	breast:
8	chr10:50272836..50273384-chr10:50369356..50370222,2	MCF-7	breast:
9	chr10:50184525..50185128-chr10:50369265..50369817,2	MCF-7	breast:
10	chr10:50368282..50370394-chr10:50503941..50507857,3	K562	blood:
11	chr10:50364786..50371686-chr10:50371829..50376692,10	K562	blood:
12	chr10:50368282..50369845-chr10:50503941..50506916,2	K562	blood:
13	chr10:50363975..50366522-chr10:50367488..50370689,4	K562	blood:
14	chr10:50340460..50342159-chr10:50369270..50372220,2	K562	blood:
15	chr10:50340659..50342841-chr10:50368235..50370770,2	K562	blood:
16	chr10:50208660..50210019-chr10:50369301..50370268,4	MCF-7	breast:
17	chr10:50189016..50189840-chr10:50369727..50370380,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177354	Chromatin interaction
ENSG00000236208	Chromatin interaction
ENSG00000172538	Chromatin interaction
ENSG00000204161	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10857444	1.00[AMR][1000 genomes]
rs10857451	1.00[AMR][1000 genomes]
rs11101012	1.00[AMR][1000 genomes]
rs11101013	1.00[AMR][1000 genomes]
rs11101020	1.00[AMR][1000 genomes]
rs11101030	1.00[AMR][1000 genomes]
rs11101031	1.00[AMR][1000 genomes]
rs11101034	1.00[AMR][1000 genomes]
rs11101044	1.00[AMR][1000 genomes]
rs11101051	1.00[AMR][1000 genomes]
rs11101054	1.00[AMR][1000 genomes]
rs12354761	1.00[AMR][1000 genomes]
rs12355572	1.00[AMR][1000 genomes]
rs41280543	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362200-50370600	Weak transcription	Spleen	Spleen
6	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:50365400-50374800	Weak transcription	Lung	lung
9	chr10:50366000-50373600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:50366800-50370200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr10:50366800-50372400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:50366800-50375400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:50367600-50376200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:50367600-50384600	Weak transcription	Dnd41	blood
16	chr10:50368000-50371600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:50368000-50375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:50368200-50380800	Weak transcription	Esophagus	oesophagus
19	chr10:50368600-50372600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr10:50368800-50370600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:50368800-50370800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:50368800-50371000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:50369000-50370000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr10:50369000-50377200	Weak transcription	Brain Angular Gyrus	brain
25	chr10:50369200-50370800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:50369400-50369800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr10:50369400-50369800	Enhancers	H9 Cell Line	embryonic stem cell
28	chr10:50369400-50369800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr10:50369400-50369800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:50369400-50369800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:50369400-50369800	Genic enhancers	Adipose Nuclei	Adipose
32	chr10:50369400-50369800	Enhancers	Brain Anterior Caudate	brain
33	chr10:50369400-50369800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr10:50369400-50369800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:50369400-50370000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:50369400-50370000	Enhancers	Fetal Muscle Leg	muscle
37	chr10:50369400-50370000	Enhancers	Fetal Thymus	thymus
38	chr10:50369400-50370000	Enhancers	NH-A	brain
39	chr10:50369400-50370800	Enhancers	NHDF-Ad	bronchial
40	chr10:50369600-50369800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:50369600-50369800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
42	chr10:50369600-50369800	Enhancers	HSMM	muscle
43	chr10:50369600-50369800	Enhancers	K562	blood
44	chr10:50369600-50370000	Enhancers	Brain Substantia Nigra	brain
45	chr10:50369600-50370200	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:50369600-50370400	Enhancers	Osteobl	bone
47	chr10:50369600-50371600	Weak transcription	NHLF	lung
48	chr10:50369600-50372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:50369600-50372400	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:50369600-50380400	Weak transcription	Gastric	stomach

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