Variant report

Variant	rs11101051
Chromosome Location	chr10:50449088-50449089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10857444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10857451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101012	1.00[AMR][1000 genomes]
rs11101013	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11101020	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11101030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11101054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11593489	0.87[EUR][1000 genomes]
rs12354761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12355572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41280543	1.00[AMR][1000 genomes]
rs41281945	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50445200-50449800	Weak transcription	K562	blood
2	chr10:50445600-50450200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr10:50447600-50452400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:50447600-50453000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:50447800-50450000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50448400-50449600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50448400-50449800	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:50448600-50449400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr10:50448800-50449400	Enhancers	HSMMtube	muscle
10	chr10:50448800-50450400	Enhancers	Fetal Stomach	stomach
11	chr10:50449000-50449200	Enhancers	Liver	Liver
12	chr10:50449000-50451000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:50449000-50451000	Enhancers	Fetal Muscle Trunk	muscle
14	chr10:50449000-50451200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:50449000-50451400	Enhancers	Left Ventricle	heart
16	chr10:50449000-50451400	Enhancers	Right Atrium	heart
17	chr10:50449000-50451600	Enhancers	Fetal Heart	heart
18	chr10:50449000-50451600	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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